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Sequences
Nikolaos Papadopoulos edited this page Dec 18, 2020
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Various genomic and transcriptomic resources.
Useful abbreviations:
- hpf: hours post fertilisation
- dpf: days post fertilisation
- mpf: months post fertilisation
- 1mPre: 1mpf, pre-cephalic metamorphosis
- 1mPost: 1mpf, post-cephalic metamorphosis
- male: male epitoke worm
- female: female epitoke worm
| Name | Description | Timeframe | Link | Publication | Notes |
|---|---|---|---|---|---|
| PdumBase | Developmental bulk transcriptomes | 2hpf-14hpf 24hpf, 48hpf, 4dpf, 15dpf, 1mPre, 1mPost, 3mpf, male | link | Chou et al., 2018 | (contains next) |
| Platy neuropeptide complement | stage-specific transcriptomes | 24hpf, 48hpf, 4dpf, 15dpf, 1mPre, 1mPost, 3mpf, male | link | Conzelmann et al. 2013 | (contained in PdumBase) |
| COI sequences | c-oxidase subunit I sequences for P. dumerilii, P. massiliensis | adult? | Link | Calosi et al., 2013 | Not sure how to find the data - the BDOC website is impossible to search. |
| COI sequences | c-oxidase subunit I sequences for P. dumerilii, P. massiliensis | adult? | Link | Waege, Valvassori et al., 2017 | Not sure how to access data. |