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@jan-janssen jan-janssen commented Jun 14, 2025

Summary by CodeRabbit

  • Chores
    • Improved handling of optional dependencies in cluster executor initialization to enhance reliability. No changes to user-facing functionality.

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coderabbitai bot commented Jun 14, 2025

Walkthrough

The changes introduce explicit imports of the pysqa module within the __init__ methods of both FluxClusterExecutor and SlurmClusterExecutor classes. These imports are conditionally executed when plot_dependency_graph is false and are placed immediately before importing create_file_executor. No other logic or structural changes are made.

Changes

File(s) Summary
executorlib/executor/flux.py,
executorlib/executor/slurm.py
Added conditional import of pysqa within the __init__ method when plot_dependency_graph is false, before importing create_file_executor. No other changes.

Poem

In the warren of code where clusters run,
A rabbit hops, its work just begun.
With pysqa now called at just the right time,
Executors prepare, all in line.
No tangled paths, just imports anew—
The code hops on, as rabbits do! 🐇✨

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@jan-janssen jan-janssen linked an issue Jun 14, 2025 that may be closed by this pull request
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codecov bot commented Jun 14, 2025

Codecov Report

Attention: Patch coverage is 50.00000% with 1 line in your changes missing coverage. Please review.

Project coverage is 96.75%. Comparing base (2133af3) to head (15f8bb4).
Report is 7 commits behind head on main.

Files with missing lines Patch % Lines
executorlib/executor/slurm.py 0.00% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #677      +/-   ##
==========================================
- Coverage   96.82%   96.75%   -0.08%     
==========================================
  Files          29       29              
  Lines        1292     1294       +2     
==========================================
+ Hits         1251     1252       +1     
- Misses         41       42       +1     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

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  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

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Actionable comments posted: 2

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between 609d185 and 15f8bb4.

📒 Files selected for processing (2)
  • executorlib/executor/flux.py (1 hunks)
  • executorlib/executor/slurm.py (1 hunks)
🧰 Additional context used
🪛 GitHub Check: codecov/patch
executorlib/executor/slurm.py

[warning] 154-154: executorlib/executor/slurm.py#L154
Added line #L154 was not covered by tests

⏰ Context from checks skipped due to timeout of 90000ms (4)
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-openmpi.yml)
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-mpich.yml)
  • GitHub Check: unittest_win
  • GitHub Check: notebooks_integration

Comment on lines +154 to +155
import pysqa # noqa

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🛠️ Refactor suggestion

Wrap pysqa import in try/except and surface a clear installation hint

A bare import pysqa will raise ModuleNotFoundError, but the default traceback does not help users understand why the executor fails. Provide a short, actionable message so the failure is self-explanatory.

-            import pysqa  # noqa
+            try:
+                import pysqa  # noqa
+            except ModuleNotFoundError as exc:
+                raise ModuleNotFoundError(
+                    "pysqa is required for SlurmClusterExecutor. "
+                    "Install it with `pip install pysqa`."
+                ) from exc

Replicating the guard used for optional dependencies elsewhere in the codebase will improve UX and prevent support noise.

📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
import pysqa # noqa
try:
import pysqa # noqa
except ModuleNotFoundError as exc:
raise ModuleNotFoundError(
"pysqa is required for SlurmClusterExecutor. "
"Install it with `pip install pysqa`."
) from exc
🧰 Tools
🪛 GitHub Check: codecov/patch

[warning] 154-154: executorlib/executor/slurm.py#L154
Added line #L154 was not covered by tests

🤖 Prompt for AI Agents
In executorlib/executor/slurm.py around lines 154 to 155, the import of pysqa is
done without error handling, which causes a ModuleNotFoundError with an unclear
traceback if the module is missing. Wrap the import statement in a try/except
block catching ModuleNotFoundError, and in the except block raise a new
ImportError with a clear, actionable message instructing the user to install
pysqa to use this executor. This pattern matches the existing optional
dependency guards in the codebase and improves user experience.

Comment on lines +337 to +338
import pysqa # noqa

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🛠️ Refactor suggestion

Mirror the safeguarded import pattern used for SLURM executor

Same rationale as in SlurmClusterExecutor—surface a concise hint when pysqa is absent.

-            import pysqa  # noqa
+            try:
+                import pysqa  # noqa
+            except ModuleNotFoundError as exc:
+                raise ModuleNotFoundError(
+                    "pysqa is required for FluxClusterExecutor. "
+                    "Install it with `pip install pysqa`."
+                ) from exc

This keeps behaviour consistent across back-ends and provides an immediate, informative error.

🤖 Prompt for AI Agents
In executorlib/executor/flux.py around lines 337 to 338, the import of pysqa
should follow the safeguarded pattern used in SlurmClusterExecutor to handle
missing dependencies gracefully. Modify the import to try importing pysqa inside
a try-except block, and if ImportError occurs, raise an ImportError with a
clear, concise message indicating that pysqa is required for this executor. This
ensures consistent behavior across back-ends and provides an immediate,
informative error when pysqa is not installed.

@jan-janssen jan-janssen merged commit c81d7a2 into main Jun 14, 2025
50 of 53 checks passed
@jan-janssen jan-janssen deleted the import_pysqa branch June 14, 2025 04:17
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[Bug] When pysqa is not installed

2 participants