Update brain-decoding path and jupyter-book build instruction

README.md

@@ -11,22 +11,30 @@ This repository contains materials and resources for workshops conducted in 2025
 ## How to Contribute
 
 1. Fork the repository.
-2. Create a new branch for your feature or bug fix:
+2. Create a new branch for your tutorial or bug fix:
    ```bash
-   git checkout -b my-feature-branch
+   git checkout -b my-branch
    ```
 3. Make your changes and commit them with clear messages:
    ```bash
-   git commit -m "Add feature X"
+   git commit -m "Add function ... to simplify tutorial ... content"
    ```
 4. Push your branch to your forked repository:
    ```bash
-   git push origin my-feature-branch
+   git push origin my-tutorial-branch
    ```
 5. Open a pull request to the main repository.
 
 Please ensure your contributions adhere to the repository's coding standards and include appropriate documentation.
 
+## Building the Book
+
+To build the book in development, assuming that the working directory is the project's folder, please call:
+
+```bash
+jupyter-book build .
+```
+
 ## Pre-commit Hooks
 
 This repository uses pre-commit hooks to ensure code quality and consistency. To set up pre-commit hooks locally, follow these steps:

tutorials/brain-disorder-diagnosis/config.py

@@ -1,14 +1,12 @@
-import os
 from yacs.config import CfgNode
 
-DEFAULT_DIR = os.path.join(os.getcwd(), "data")
 
 _C = CfgNode()
 
 # Dataset configuration
 _C.DATASET = CfgNode()
 # Path to the dataset directory
-_C.DATASET.PATH = DEFAULT_DIR
+_C.DATASET.PATH = "data"
 # Name of the brain atlas to use
 # Available options:
 # - "aal" (AAL)

tutorials/brain-disorder-diagnosis/data.py

@@ -27,8 +27,8 @@
                 }
             )
         ],
-        "vectorize": [bool],
-        "verbose": [bool],
+        "vectorize": ["boolean"],
+        "verbose": ["boolean"],
     },
     prefer_skip_nested_validation=False,
 )