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36 changes: 36 additions & 0 deletions CITATION.cff
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@@ -0,0 +1,36 @@
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: >-
Using Large Language Models to support researchers
reproduce and reuse unpublished health care discrete-event
simulation computer models: a feasibility and pilot study
in Python
message: >-
If you use this software, please cite it using the
metadata from this file.
type: software
authors:
- given-names: Thomas
family-names: Monks
orcid: 'https://orcid.org/0000-0003-2631-4481'
affiliation: University of Exeter
email: t.m.w.monks@exeter.ac.uk
- given-names: Alison
family-names: Harper
affiliation: University of Exeter
orcid: 'https://orcid.org/0000-0001-5274-5037'
email: a.l.harper@exeter.ac.uk
- given-names: Amy
family-names: Heather
email: a.heather2@exeter.ac.uk
affiliation: University of Exeter
orcid: 'https://orcid.org/0000-0002-6596-3479'
- given-names: Navonil
family-names: Mustafee
orcid: 'https://orcid.org/0000-0002-2204-8924'
affiliation: University of Exeter
email: n.mustafee@exeter.ac.uk
repository-code: 'https://github.com/pythonhealthdatascience/llm_simpy'
license: MIT
34 changes: 24 additions & 10 deletions README.md
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[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)
[![Python 3.10+](https://img.shields.io/badge/python-3.10+-blue.svg)](https://www.python.org/downloads/release/python-360+/)
[![PyPI version fury.io](https://badge.fury.io/py/treat-sim.svg)](https://pypi.org/project/treat-sim/)
[![ORCID: Harper](https://img.shields.io/badge/ORCID-0000--0001--5274--5037-brightgreen)](https://orcid.org/0000-0001-5274-5037)
[![ORCID: Monks](https://img.shields.io/badge/ORCID-0000--0003--2631--4481-brightgreen)](https://orcid.org/0000-0003-2631-4481)
[![Licence: MIT](https://img.shields.io/badge/Licence-MIT-yellow.svg)](https://opensource.org/licenses/MIT)
[![Python 3.10+](https://img.shields.io/badge/-Python_≥_3.10-306998?logo=python&logoColor=white)](https://www.python.org/downloads/release/python-360+/)

# Using Large Language Models to support researchers reproduce and reuse unpublished health care discrete-event simulation computer models: a feasibility and pilot study in Python

## Authors

* Thomas Monks [![ORCID: Monks](https://img.shields.io/badge/ORCID-0000--0003--2631--4481-brightgreen)](https://orcid.org/0000-0003-2631-4481)
* Alison Harper [![ORCID: Harper](https://img.shields.io/badge/ORCID-0000--0001--5274--5037-brightgreen)](https://orcid.org/0000-0001-5274-5037)
* Thomas Monks    [![ORCID: Monks](https://img.shields.io/badge/ORCID-0000--0003--2631--4481-brightgreen)](https://orcid.org/0000-0003-2631-4481)

* Navonil Mustafee [![ORCID: Harper](https://img.shields.io/badge/ORCID-0000--0001--5274--5037-brightgreen)](https://orcid.org/0000-0002-2204-8924)
* Alison Harper    [![ORCID: Harper](https://img.shields.io/badge/ORCID-0000--0001--5274--5037-brightgreen)](https://orcid.org/0000-0001-5274-5037)

## Creating the virtual environment
* Amy Heather    [![ORCID: Heather](https://img.shields.io/badge/ORCID-0000--0002--6596--3479-brightgreen)](https://orcid.org/0000-0002-6596-3479)

* Navonil Mustafee    [![ORCID: Mustafee](https://img.shields.io/badge/ORCID-0000--0002--2204--8924-brightgreen)](https://orcid.org/0000-0002-2204-8924)

## Creating the environment

The project uses `conda` to manage dependencies. Navigate your terminal to the directory containing the code

```
conda env create -f binder/environment.yml
```

This will create a conda virtual environment called `gen_simpy`. To activate:
This will create a conda environment called `gen_simpy`. To activate:

```
conda activate gen_simpy
Expand All @@ -36,3 +36,17 @@ jb build .
```

This will build the HTML book locally on your machine. The terminal will display a URL link that you can use to point your browser at the HTML.

## Citation

Please cite this repository as:

> Thomas Monks, Alison Harper, Amy Heather, and Navonil Mustafee. **Using Large Language Models to support researchers reproduce and reuse unpublished health care discrete-event simulation computer models: a feasibility and pilot study in Python**. <https://github.com/pythonhealthdatascience/llm_simpy>.

A `CITATION.cff` file is also provided.

<!--TODO: Archive repository on Zenodo, and cite that -->

## Funding

<!--TODO: Add funding statement-->
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