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rename data folder for pooled data #54

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Merged
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Nov 3, 2020
Merged

rename data folder for pooled data #54

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5 changes: 4 additions & 1 deletion drop-boxes/register-nanopore-dropbox/register-nanopore.py
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Original file line number Diff line number Diff line change
Expand Up @@ -226,12 +226,15 @@ def registerUnclassifiedData(transaction, unclassifiedDataMap, runExperiment, cu
# moves a subset of nanopore data to a new target path, needed to add fastq and fast5 subfolders to the same dataset
def prepareDataFolder(incomingPath, currentPath, destinationPath, dataObject, suffix):
name = dataObject.getName()
# if pooled data, folder is named using barcode and needs to be adapted
if not "_" in name:
name = name + "_" + suffix
relativePath = dataObject.getRelativePath()
# the source path of the currently handled data object (e.g. fast5_fail folder)
sourcePath = os.path.join(os.path.dirname(currentPath), relativePath)
checksumFile = createChecksumFileForFolder(incomingPath, sourcePath)
# destination path containing data type (fastq or fast5), as well as the parent sample code, so pooled samples can be handled
destination = os.path.join(destinationPath, name + "_" + suffix)
destination = os.path.join(destinationPath, name)
os.rename(sourcePath, destination)

def createSampleWithData(transaction, space, parentSampleCode, mapWithDataForSample, openbisExperiment, currentPath, absLogPath):
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