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FEAT: qiime tools show-types and qiime tools show-formats commands #291

Merged
merged 22 commits into from
May 10, 2023
Merged

FEAT: qiime tools show-types and qiime tools show-formats commands #291

merged 22 commits into from
May 10, 2023

Commits on Mar 3, 2023

  1. differentiate stdout between cache entry and file output

    @colinvwood
    colinvwood committed Mar 3, 2023
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Commits on Mar 6, 2023

  1. semantic types and descriptions working non tsv

    @colinvwood
    colinvwood committed Mar 6, 2023
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  2. standard output and tsv working for semantic types and formats

    @colinvwood
    colinvwood committed Mar 6, 2023
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Commits on Mar 7, 2023

  1. changing to two commands, variadic args, fuzzy matching, and strict flag

    @colinvwood
    colinvwood committed Mar 7, 2023
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  2. include simple substring search in addition to fuzzy matching

    @colinvwood
    colinvwood committed Mar 7, 2023
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  3. linted

    @colinvwood
    colinvwood committed Mar 7, 2023
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  4. first tests for show-types

    @colinvwood
    colinvwood committed Mar 7, 2023
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  5. changes in separate pr, reverted back to simple stdout from stdout di… 

    …fferentiating between file and cache
    @colinvwood
    colinvwood committed Mar 7, 2023
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  6. small importable/exportable bug

    @colinvwood
    colinvwood committed Mar 7, 2023
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  7. deformat doc strings

    @colinvwood
    colinvwood committed Mar 7, 2023
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  8. strict bug

    @colinvwood
    colinvwood committed Mar 7, 2023
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  9. linted

    @colinvwood
    colinvwood committed Mar 7, 2023
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  10. first tests for show-formats

    @colinvwood
    colinvwood committed Mar 7, 2023
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Commits on Mar 10, 2023

  1. old --show-importable-[types/formats] redirects user to new commands

    @colinvwood
    colinvwood committed Mar 10, 2023
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  2. eager option bug and add --help flag to message

    @colinvwood
    colinvwood committed Mar 10, 2023
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  3. removed old --show-importable-[types/formats] tests

    @colinvwood
    colinvwood committed Mar 10, 2023
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Commits on May 9, 2023

  1. Merge branch 'master' into qiime-tools-show-importable

    @colinvwood
    colinvwood committed May 9, 2023
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  2. typos, function renaming

    @colinvwood
    colinvwood committed May 9, 2023
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  3. change string matching lenience, other small refactorings

    @colinvwood
    colinvwood committed May 9, 2023
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  4. amend strict test to test close match

    @colinvwood
    colinvwood committed May 9, 2023
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  5. anthony fix

    @colinvwood
    colinvwood committed May 9, 2023
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Commits on May 10, 2023

  1. explicit length of queries conditional

    @colinvwood
    colinvwood committed May 10, 2023
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