Pixi dependency management #301
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| # SCM syntax highlighting & preventing 3-way merges | ||
| pixi.lock merge=binary linguist-language=YAML linguist-generated=true -diff |
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| name: Run pytest suite | ||
| description: Run a marked pytest suite and publish its reports. | ||
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| inputs: | ||
| test-suite-name: | ||
| description: Test suite name used in coverage, JUnit, and artifact filenames. | ||
| required: true | ||
| markers: | ||
| description: Pytest marker expression to select tests. | ||
| required: true | ||
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| runs: | ||
| using: composite | ||
| steps: | ||
| - name: Prepare report names | ||
| id: report-names | ||
| shell: bash | ||
| env: | ||
| TEST_SUITE_NAME: ${{ inputs.test-suite-name }} | ||
| run: | | ||
| echo "coverage-file=.coverage.${TEST_SUITE_NAME}" >> "$GITHUB_OUTPUT" | ||
| echo "junit-file=test_junit_${TEST_SUITE_NAME}.xml" >> "$GITHUB_OUTPUT" | ||
| echo "artifact-name=raw_test_reports_${TEST_SUITE_NAME}" >> "$GITHUB_OUTPUT" | ||
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| - name: Run pytest | ||
| id: pytest | ||
| shell: bash | ||
| continue-on-error: true | ||
| env: | ||
| COVERAGE_FILE: ${{ steps.report-names.outputs.coverage-file }} | ||
| JUNIT_FILE: ${{ steps.report-names.outputs.junit-file }} | ||
| PYTEST_MARKERS: ${{ inputs.markers }} | ||
| run: | | ||
| pytest_args=( | ||
| -v | ||
| -m "${PYTEST_MARKERS}" | ||
| --cov | ||
| --cov-report=term | ||
| --color=yes | ||
| -o junit_logging=all | ||
| --junitxml="${JUNIT_FILE}" | ||
| ) | ||
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| if [ -n "${TEST_TIMING_OPTION:-}" ]; then | ||
| read -r -a timing_args <<< "${TEST_TIMING_OPTION}" | ||
| pytest_args+=("${timing_args[@]}") | ||
| fi | ||
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| pytest "${pytest_args[@]}" | ||
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| - name: Publish junit pytest report | ||
| if: always() | ||
| uses: mikepenz/action-junit-report@v6 | ||
| with: | ||
| report_paths: ${{ steps.report-names.outputs.junit-file }} | ||
| annotate_only: true | ||
| job_summary: false | ||
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| - name: Upload raw test reports | ||
| if: always() | ||
| uses: actions/upload-artifact@v7 | ||
| with: | ||
| name: ${{ steps.report-names.outputs.artifact-name }} | ||
| include-hidden-files: true | ||
| path: | | ||
| ${{ steps.report-names.outputs.coverage-file }} | ||
| ${{ steps.report-names.outputs.junit-file }} | ||
| if-no-files-found: error | ||
| retention-days: 7 | ||
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| - name: Fail if pytest failed | ||
| if: steps.pytest.outcome == 'failure' | ||
| shell: bash | ||
| run: exit 1 |
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| --- | ||
| name: Setup QUEENS pixi environment | ||
| description: > | ||
| Set up pixi, install QUEENS editable into the selected environment, | ||
| and optionally ensure rsync is available. | ||
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| inputs: | ||
| cache: | ||
| description: Whether setup-pixi should enable caching. | ||
| required: false | ||
| default: "true" | ||
| cache-write: | ||
| description: Whether setup-pixi should write to the cache. | ||
| required: false | ||
| default: "false" | ||
| run-install: | ||
| description: Whether setup-pixi should install the selected pixi environments. | ||
| required: false | ||
| default: "true" | ||
| environments: | ||
| description: Whitespace-separated list of pixi environments to install. | ||
| required: false | ||
| default: default | ||
| activate-environment: | ||
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leahaeusel marked this conversation as resolved.
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| description: Pixi environment to activate and use for the editable install. | ||
| required: false | ||
| default: default | ||
| install-editable: | ||
| description: Whether to install QUEENS editable into the selected pixi environment. | ||
| required: false | ||
| default: "true" | ||
| ensure-rsync: | ||
| description: Whether to verify that rsync is available, installing it if necessary. | ||
| required: false | ||
| default: "true" | ||
| frozen: | ||
| description: Whether to install with frozen requirements. | ||
| required: false | ||
| default: "true" | ||
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| runs: | ||
| using: composite | ||
| steps: | ||
| - name: Read pixi version | ||
| id: pixi-version | ||
| shell: bash | ||
| run: | | ||
| pixi_version="$(tr -d '[:space:]' < "${GITHUB_WORKSPACE}/.pixi-version")" | ||
| echo "version=${pixi_version}" >> "$GITHUB_OUTPUT" | ||
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| - uses: prefix-dev/setup-pixi@v0.9.5 | ||
| with: | ||
| pixi-version: ${{ steps.pixi-version.outputs.version }} | ||
| cache: ${{ inputs.cache }} | ||
| cache-write: ${{ inputs.cache-write }} | ||
| run-install: ${{ inputs.run-install }} | ||
| environments: ${{ inputs.environments }} | ||
| frozen: ${{ inputs.frozen }} | ||
| activate-environment: ${{ inputs.activate-environment }} | ||
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| - name: Install QUEENS in workspace | ||
| if: ${{ inputs.install-editable != 'false' }} | ||
| shell: bash | ||
| run: | | ||
| pixi run --locked -e "${{ inputs.activate-environment }}" install-editable | ||
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| - name: Mark repo as safe for git | ||
| shell: bash | ||
| run: | | ||
| git config --global --add safe.directory "${GITHUB_WORKSPACE}" | ||
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| - name: Ensure rsync is available | ||
| if: ${{ inputs.ensure-rsync != 'false' }} | ||
| shell: bash | ||
| run: | | ||
| if command -v rsync >/dev/null 2>&1; then | ||
| rsync --version | ||
| elif [ "${RUNNER_OS}" = "Linux" ]; then | ||
| sudo apt-get update | ||
| sudo apt-get install -y rsync | ||
| rsync --version | ||
| elif [ "${RUNNER_OS}" = "macOS" ]; then | ||
| brew install rsync | ||
| rsync --version | ||
| else | ||
| echo "Unsupported runner OS for rsync setup: ${RUNNER_OS}" | ||
| exit 1 | ||
| fi | ||
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Member
There was a problem hiding this comment. Really nice to have this github-actions updating mechanism now! As mentioned before, I am only concerned that the PR mechanism won't work because we disabled all branches besides main...
Member
Author
There was a problem hiding this comment. Very good point as mentioned here, we should find a solution that remains as restrictive as possible. |
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| --- | ||
| version: 2 | ||
| updates: | ||
| - package-ecosystem: github-actions | ||
| directories: | ||
| - / | ||
| - /.github/actions/setup-queens-pixi | ||
| schedule: | ||
| interval: monthly | ||
| groups: | ||
| github-actions: | ||
| patterns: | ||
| - "*" | ||
| cooldown: | ||
| default-days: 7 |
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