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Run tests that the biogeo tutorials work #66

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Merged
merged 2 commits into from
May 30, 2025
Merged

Run tests that the biogeo tutorials work #66

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aa21465
Run tests that the biogeo tutorials work
bredelings May 29, 2025
02f9926
Merge branch 'source' into add-biogeo-tests
bredelings May 30, 2025
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5 changes: 5 additions & 0 deletions tutorials/biogeo/tests.txt
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Original file line number Diff line number Diff line change
@@ -0,0 +1,5 @@
run_simple.Rev
run_simple_phy.Rev
run_epoch.Rev
run_epoch_phy.Rev
mcmc_primates_bg_simple.Rev
7 changes: 6 additions & 1 deletion tutorials/run_tutorial_tests.sh
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Expand Up @@ -62,7 +62,12 @@ for t in */tests.txt; do
do
(
cd scripts
sed 's/generations=[0-9]*/generations=1/g' "$script" | sed 's/checkpointInterval=[0-9]*/checkpointInterval=1/g' > "cp_$script"
cat "$script" |
sed 's/generations=[0-9]*/generations=1/g' |
sed 's/^n_gen *= *[0-9]*/n_gen = 1/' |
sed 's/\.burnin([0-9][0-9]*/.burnin(1/' |
sed 's/\.run([0-9][0-9]*/.run(1/' |
sed 's/checkpointInterval=[0-9]*/checkpointInterval=1/g' > "cp_$script"
)
${rb_exec} -b scripts/cp_$script
res="$?"
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