Curriculum vitae
- Name: Richèl J.C. Bilderbeek
- Street: ---
- ZIP code: ---
- City: Uppsala
- Country: Sweden
- Telephone number: ---
- E-mail: ---
- Date of birth: the 2nd September of 1980
- Place of birth: Milsbeek, The Netherlands
- Gender: Male
- Homepage: http://www.richelbilderbeek.nl
- Nationality: Dutch
Parameter | Value |
---|---|
University/College of Higher Education | University of Groningen |
Faculty | Science and Engineering |
Date of the certificate | August 2008 |
Main subject | Teaching Biology |
Parameter | Value |
---|---|
University/College of Higher Education | University of Groningen |
Faculty | University Centre for Learning & Teaching |
Date of the certificate | August 2006 |
Main subject | Biology |
Parameter | Value |
---|---|
University/College of Higher Education | University of Groningen |
Date and place of (intended) doctoral degree as stated on your certificate | September 2020 |
Supervisor ('Promotor') | Rampal Etienne |
Title of thesis | Speciation and the error we make in phylogenetic inference |
Parameter | Value |
---|---|
University/College of Higher Education | University of Groningen |
Timespan | April 2020-March 2021 |
Professor | Geert van den Bogaart |
Project title | The overlooked importance of TMHs in immunology |
Parameter | Value |
---|---|
University/College of Higher Education | Uppsala University |
Timespan | April 2021-Juli 2022 (aborted) |
Professor | Ă…sa Johansson |
Project title | Machine learning in quantitative trait prediction |
- Bochum, Germany, MSc project, 6 months
- Bristol, England, MSc project, 3 months
Period | Education | Diploma |
---|---|---|
2011-2014 | Mechatronics, Alfa Collega, Groningen | No |
2007-2008 | University Centre for Learning & Teaching, Groningen | Yes |
1999-2005 | University of Groningen, Biology, focus on Theoretical Biology | Yes |
1991-1998 | VWO, Pax Christi College, Druten | Yes |
Period | Course | Certicate |
---|---|---|
2019 | Company safety (BHV) | Yes |
2017 | Company safety (BHV) | Yes |
2016 | Assessment of assignments and theses | Yes |
2011 | Company safety (BHV) | Yes |
2010 | SolidWorks basics | Yes |
2010 | Company safety (BHV) | Yes |
2006 | Factory safety (VCA) | Yes |
2000 | Safe microbiological techniques (VMT), University of Groningen | Yes |
1990 | Programming in BASIC | Yes |
Period | Course | Certificate |
---|---|---|
2021 | SFI D level | Yes |
2021 | SFI C level | Yes |
2020 | Ballroom dancing, silver | Yes |
2019 | Forging, Stevens Smederij, Groningen | N/A |
2019 | AIDA freediving level 1 | Yes |
2019 | Ballroom dancing, bronze | Yes |
2014 | Salsa dancing, mid 1 | N/A |
2013 | Skateboarding, Colloseum Groningen | N/A |
2013 | Bachata, beginners | N/A |
2013 | Salsa dancing, beginner | N/A |
2013 | Ballroom dancing, silver star | Yes |
2012 | Ballroom dancing, bronze and silver | Yes |
2006 | Basics of forging | N/A |
2006 | Basics of car maintainance | N/A |
2006 | Basics of welding | N/A |
- Bilderbeek (in preparation). The computer code of computational research is vital paradata, the academic paper optional metadata. Edited volume on paradata
- Lambert, Neves, Bilderbeek, Valente & Etienne (2022). The effect of mainland dynamics on data and parameter estimates in island biogeography. bioRxiv (accepted for publication)
- Bilderbeek, Baranov, Van Den Bogaart & Bianchi (2021). Transmembrane Helices Are an Over-Presented and Evolutionarily Conserved Source of Major Histocompatibility Complex Class I and II Epitopes. Frontiers in immunology, 12 (GitHub repository with all code)
- Bilderbeek (2020) mcbette: model comparison using babette. Journal of Open Source Software 5.54: 2762. https://doi.org/10.21105/joss.02762
- Bilderbeek, Laudanno and Etienne (2020) Quantifying the impact of an inference model in Bayesian phylogenetics. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.13514 (GitHub repository with all code)
- Bilderbeek and Etienne (2018) babette: BEAUti 2, BEAST2 and Tracer for R. Methods in Ecology and Evolution 9, no. 9: 2034-2040. https://doi.org/10.1111/2041-210X.13032 (GitHub repository with all code)
- van den Bogaart, Bilderbeek, Schaap, Hummel and Kirschner (2016) A computer-supported method to reveal and assess Personal Professional Theories in vocational education. Technology, pedagogy and education 25, no. 5: 613-629. https://doi.org/10.1080/1475939X.2015.1129986
- Singularity blog post
- Continuous integration with Travis CI: a guest blog post on Simplify C++
- Raising Your Code to Professional Standards: a free article for the (discontinued) SDJournal.
- Methods.blog post: The babette R Package: How to Sooth the Phylogenetic BEAST2
- rOpenSci blog post: Call BEAST2 for Bayesian evolutionary analysis from R
- rOpenSci blog post: Selecting the Best Phylogenetic Evolutionary Model
- Boost Graph Cookbook 1: book about the Boost.Graph library
- Developing Bevy games using TDD: book about learning the Bevy Rust gaming library using test-driven development
- How to add a custom tree prior to BEAST2
- Travis CI for C++ Tutorial
- Theatertechniek: stagecraft (Dutch)
- Arduino voor jonge tieners
- C++ voor jonge tieners
- git voor jonge tieners
- mBot voor jonge tieners
- Processing voor jonge tieners
Name | Downloads | Total number of downloads |
---|---|---|
babette | ||
beastier | ||
beautier | ||
mauricer | ||
mcbette | ||
mhcnuggetsr | ||
netmhc2pan | ||
pirouette | ||
pureseqtmr | ||
tmhmm | ||
tracerer |
Name | Downloads | Total number of downloads |
---|---|---|
babette | ||
beastier | ||
beautier | ||
mcbette | ||
tracerer |
Name | Downloads | Total number of downloads |
---|---|---|
DAISIE | ||
GenomeAdmixR | ||
markovchain | ||
nLTT | ||
Peptides | ||
phangorn |
- mlpack: a C++ machine-learning library
- Jorik de Boer
- Kees Wesselink
- Joris Damhuis
- Jolien Gay
- Elles Jetten
- Dave Nijhuis
- Damian Over
- Frans Thon, University of Bielefeld
- Anne Hinrichs
- Aram Petiet
- Hidde Nauta
- Jasper Bakker
- Jeroen van Niemendal
- Jorn Prenger
- Joshua van Waardenberg
- Marijn Meerveld
- Mart Prenger
- Owen Moorman
- Rijk van Putten
- Arvid
- SimImmuneResponse: human immune response simulator
- SimStagecraft: stagecraft simulator
- SoaSim: STD transmission simulator
- tresinformal, 2019-2024
- informalr, 2020-2021
- Team Octane, 2017-2018
Ordered by ending date, then beginning date, most recent at top.
Period | Function |
---|---|
Mar 2023-present | Application expert |
Sep 2021-present | Coordinator Arduino, Blender and programming courses (voluntarily) |
Sep 2019-Mar 2024 | Lead developer C++ programming team 'tresinformal' (voluntarily) |
Apr 2021-Jun 2022 | Postdoc in Genetic epidemiology (aborted) |
Apr 2020-Mar 2021 | Postdoc in Immunology |
May 2019-Jan 2021 | Coordinator Arduino and mBot course (voluntarily) |
Jan 2019-Jan 2021 | Organization of taking 12-18 yo kids to academic lectures (voluntarily) |
Apr 2015-Jan 2021 | Coordinator Processing course (voluntarily) |
Sep 2014-Oct 2020 | PhD |
Nov 2018-Nov 2019 | Freelance researcher: BBBQ (voluntarily) |
Sep 2018-Sep 2019 | Coordinator C++ programmers 'Team Octane' (voluntarily) |
Oct 2018-Feb 2019 | Outreach: Skype a Scientist |
Dec 2018-Jan 2019 | Freelance instructor mBot at Parcival |
Dec 2017-Dec 2018 | TRES PhD representative |
Sep 2018-Dec 2018 | Organiser of expert lectures at De Jonge Onderzoekers (voluntarily) |
Oct 2017-Oct 2018 | Independent research with Megan Korte |
Jan 2014-Sep 2018 | Coordinator Arduino course (voluntarily) |
Feb 2015-Sep 2018 | Coordinator R User Group Groningen (voluntarily) |
Aug 2012-Aug 2018 | Independent researcher: BrainWeaver |
Nov 2017-Jun 2018 | Lead research programmer for Andrea Soto (voluntarily) |
Sep 2016-Dec 2016 | Coordinator BioCourse (voluntarily) |
May 2015-May 2015 | Freelance researcher: development of a generic experimental game theory server with, among others, MSc Lucas Molleman from the Theoretical Biology group at the University of Groningen. |
Sep 2014-Dec 2014 | Coordinator Makercourse (voluntarily) |
Apr 2015-Sep 2014 | Welder at Corsowijk de Korenbloem (voluntarily) |
Jun 2014-Sep 2014 | Welder at Corsowijk de Korenbloem (voluntarily) |
Apr 2012-Jul 2014 | Schut BV: intern at research department |
Apr 2013-Sep 2013 | Welder at Corsowijk de Korenbloem (voluntarily) |
Sep 2006-Mar 2013 | C++ trainer: improving the C++ knowledge of beginner and advanced programmers with a tailor-made training for DTS, Meppel. |
Oct 2012-Jan 2013 | Freelance light- and soundtechnician Babylon |
Nov 2010-Oct 2012 | Light- and soundtechnician (voluntarily): ensuring profession lighting and sound for bands or theatre plays for the Prinsentheater in Groningen. |
Sep 2011-Mar 2012 | Lockwood: intern, electronics and PLC programming |
Nov 2011-Nov 2011 | TugaLogix: mobile phone app development |
Feb 2011-May 2011 | Freelance researcher: improving an algorithm in C++ to calculate the probability of a certain phylogeny in cooperation with Dr. Rampal Etienne from the Community and Conservation Ecology group at the University of Groningen. |
Aug 2009-May 2011 | Freelance stagecraft workshops supervisor: teaching and making a team of secondary school students do the entire stagecraft of a presentation as a member of the ROET (Arnhem) crew. |
May 2010-Jan 2011 | Freelance researcher: improving the speed of an algorithm in C++ to calculate the probability of a binary phylogeny in cooperation with Dr. Rampal Etienne from the Community and Conservation Ecology group at the University of Groningen. |
Oct 2008-Aug 2010 | Teacher in biology, physics/chemistry and stagecraft: educating third and fourth year secondary school students from the levels of BBL, KBT and TL in the subjects of biology, physics/chemistry and stagecraft at VMBO 't Venster, Arnhem. |
May 2009-Oct 2009 | Freelance researcher: improving an algorithm in C++ to calculate the probability of a certain phylogeny in cooperation with Dr. Rampal Etienne from the Community and Conservation Ecology group at the University of Groningen. |
Sep 2007-Oct 2008 | LIO ('Teacher In Education') in biology and science: educating first, third and fourth year secondary school students from the levels of TL and VWO in the subjects of biology and science, under the supervision of Maurits Dijkstra at Belcampo, Groningen. |
Nov 2000-Aug 2008 | Light- and soundtechnician (voluntarily): ensuring profession lighting and sound for bands or theatre plays for the Prinsentheater in Groningen. |
Sep 2006-May 2007 | Programmer: maintaining and improving the source code of an insurance system written in C, CL, Prolog and embedded SQL for DTS, Meppel. |
Feb 2006-May 2006 | Freelance researcher: developing individual-based simulations in C++ about honest signaling with Dr. T.Veen at Theoretical Biology at the University of Groningen. |
Feb 2006-Mar 2006 | Freelance course supervisor, -developer and teacher 'C++ for biologists': improving, supervising and teaching the course 'C++ for biologists' with Dr. G.S.Van Doorn for Theoretical Biology at the University of Groningen. |
Jan 2006-Jan 2006 | Freelance software developer: developing an application in C++ that executes the administrators' daily startup routine automatically for Transcom Worldwide, Groningen. |
Dec 2005-Dec 2005 | Freelance software developer: developing an application in C++ that reformats Excel sheets automatically, for Transcom Worldwide, Groningen. |
Oct 2005-Nov 2005 | Freelance researcher: developing an individual-based simulation in C++ about cross-species mating with Dr. C.Wiley at Theoretical Biology at the University of Groningen. |
May 2005-Aug 2005 | Student researcher in theoretical biology: developing individual-based simulations in C++ about the influence of phentoypic plasticity on population dynamics under the supervision of Dr. R.Payne at the University of Bristol. |
May 2004-Sep 2005 | Freelance researcher: developing a simulation in C++ visualizing the risk of growing GMO's for the Dutch Commission on Genetic Modification in cooperation with Dr. M.W.Kleefsman-Smith, Prof. F.J.Weissing and Dr. R.Bijlsma (from the University of Groningen) for the Commission on Genetic Modification, Bilthoven |
Sep 2004-Mar 2005 | Student researcher in artificial intelligence: developing an intelligent navigational system in C++ for robots under the supervision of Jr.Prof. C.Igel and Dr. I.Iossifidis at the University of Bochum |
Apr 2004-May 2004 | Course supervisor, -developer and teacher 'C++ for biologists': improving, supervising and teaching the course 'C++ for biologists' with Drs. D. Reid for Theoretical Biology at the University of Groningen |
Aug 2003-Oct 2003 | Course developer 'C++ for biologists': developing, supervising and teaching the course 'C++ for biologists' with Drs. H. Verkiel commissioned by prof. F.J.Weissing for Theoretical Biology at the University of Groningen |
Jan 2003-Jul 2003 | Student researcher in theoretical biology: developing an individual-based simulation in C++ about the evolution of hermaphroditism under the supervision of Drs. G.S. van Doorn for Theoretical Biology at the University of Groningen |
Apr 1999-May 1999 | Leader homework-camp: Leading a nine-day camp for secondary school students that need aiding in their courses, for Anderwijs, Utrecht |
Jan 1999-Feb 1999 | Leader homework-camp: Leading a nine-day camp for secondary school students that need aiding in their courses, for Anderwijs, Utrecht |
Day | Frequency | Activity |
---|---|---|
Jan 2023-present | Monthly | Open Science Uppsala |
Mar 2023-present | Monthly | Navet Beer Club |
Mar 2014-present | Yearly | Pi Day |
Mar 2012-present | Yearly | Pi Approximation Day |
Day | Activity |
---|---|
May 2022 | Organiser Programmeringsdag for 8-18 yo |
Jun 2019 | Organiser Hackathon for 12-18 yo |
May 2019 | Organiser Hackathon for 12-18 yo |
May 2019 | Coach Django Girls |
Apr 2019 | visit NLSEB |
Apr 2019 | Supervision of 2 interns at University of Groningen |
Mar 2019 | FameLab participant |
Nov 2018 | babette lecture |
Oct 2018 | Volunteer with kids @ Zpannend Zernike |
Aug 2018 | Volunteer with kids @ Noorderzon |
Jul 2018 | Organizer Hackathon @ DJO |
Jun 2018 | Financial controller (voluntairly) @ TT Assen |
Jun 2018 | Volunteer with kids @ Central Library for ? |
Jun 2018 | Perform @ Open Podium, Haren |
Apr 2018 | Volunteer with kids @ Koningsdag |
Apr 2018 | Visit conference NLSEB |
Mar 2018 | Perform @ Open Podium, Groningen |
Feb 2018 | Volunteer with kids @ Open Dag DJO |
Jan 2018 | Lecturer at Practical Bioinformatics for Biologists |
Dec 2017 | Volunteer with kids @ OrbitFest Groningen |
Dec 2017 | Volunteer with kids @ Maakfestival Hoogezand |
Oct 2017 | Volunteer with kids @ Zpannend Zernike |
Sep 2017 | Volunteer with kids @ Treinenbeurs, Groningen |
Aug 2017 | Volunteer @ ESEB |
Jun 2017 | Organiser of Science and Hi-Tech Day @ DJO |
May 2017 | Teaching welding to kids |
May 2017 | Interview CppCast |
Feb 2017 | Volunteer, kids teaching at Open Dag DJO |
Feb 2016 | NAEM conference @ Lunteren |
Oct 2015 | Volunteer, workshop Arduino @ Public library Assen |
Oct 2015 | Volunteer with kids @ Zpannend Zernike |
Sep 2015 | Volunteer teaching 'Practical Bioinformatics for Biologists' |
Sep 2015 | Volunteer cash Kadepop |
Jul 2015 | MMEE conference @ Paris |
Apr 2015 | With DJO at Mini-Makerfaire Groningen |
Jun 2015 | Coordindator (voluntarily) in kids teaching at Roboticadag, DJO |
Dec 2014-Sep 2019 | Volunteer representative at DJOG |
Mar 2014 | Performance Open Stage @ Prinsentheater |
Mar 2014 | Performance Open Stage @ GLV Idun |
Jan 2014 | With DIYbio at Mini-Makerfaire Maas en Waal |
Feb 2013-present | Co-founder hackerspace Hive5 |
Jan 2010-Nov 2012 | Presenter Open Podium |
Jun 2010 | Actor ATS |
- Programming
- Studying
- Member of Uppsala Makerspace
- Chess
- Ballroom dancing
- Member of Mensa
- Composing and performing songs on the piano
- Handicrafts: welding, forging, sculpturing
- Stagecraft, both light and sound engineering
- Skateboarding
- Het Bilderbeek, Bilderbeek en Bogaart, Bogaart Quartet (2002)
- The Fanstars (2007)
- Dubai Coke, https://dubaicoke.nl (2020)
Language | Writing | Speaking |
---|---|---|
Dutch | Good | Good |
English | Good | Good |
French | Basic | Basic |
German | Mediocre | Mediocre |
Swedish | Fine | Fine |
Language | Skill | Years of experience |
---|---|---|
C++ | Good | 20 |
Python | Mediocre | 3 |
R | Good | 5 |
Rust | Mediocre | 1 |
Name | Downloads | Total number of downloads |
---|---|---|
babette | ||
beastier | ||
beautier | ||
mauricer | ||
mcbette | ||
mhcnuggetsr | ||
netmhc2pan | ||
pirouette | ||
pureseqtmr | ||
tmhmm | ||
tracerer |