gtexr 0.2.1

Major changes

• Breaking changes:

  • get_sample_datasets() has been fixed to return a tibble with one row per
    data item (#24).

JOSS-Zenodo

Addresses openjournals/joss-reviews#8249 (comment)

gtexr 0.2.0

Major changes

• All functions now include a .return_raw argument, enabling the user to retrieve
  the raw JSON from API calls.

• Functions that return a paginated response now include a .verbose argument,
  which can be set to FALSE to suppress pagination messages. The itemsPerPage
  argument for these functions can also be set globally by adjusting option
  "gtexr.itemsPerPage".

• get_dataset_info() has now been fixed (previously returned an empty tibble).

• Breaking changes:

  • get_sample_datasets_endpoints() has been renamed to
    get_sample_datasets(). This is to match the naming convention used for
    get_sample_biobank_data(), whereby 'get_sample' is appended with
    their respective category titles 'datasets' and 'biobank_data'.

  • get_multi_tissue_eqtls() has been fixed to return a tibble with one row
    per data item. Argument gencodeIds has also been renamed to gencodeId to
    match the GTEx API.

Minor changes and bug fixes

• Various function arguments have been updated to match the GTEx API:

  • get_sqtl_genes() argument tissueSiteDetailId has been pluralised to
    tissueSiteDetailIds.

  • get_eqtl_genes(), get_sqtl_genes(), get_exons(), get_neighbor_gene(),
    get_subject(), get_tissue_site_detail(), get_significant_single_tissue_sqtls(),
    download() and get_sample_datasets() (formerly called
    get_sample_datasets_endpoints()) default argument values now match API.

gtexr 0.1.0

• Initial CRAN submission.