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[probabyl fixed] memleak in LinBox::GivPolynomial exposed by ModularSymbols(n,sign=1).decomposition() #560

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sagetrac-mabshoff mannequin opened this issue Sep 2, 2007 · 2 comments
Closed

[probabyl fixed] memleak in LinBox::GivPolynomial exposed by ModularSymbols(n,sign=1).decomposition() #560

sagetrac-mabshoff mannequin opened this issue Sep 2, 2007 · 2 comments
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@sagetrac-mabshoff
Labels
p: major / 3 t: bug
Milestone
sage-3.0

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@sagetrac-mabshoff
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Mannequin

sagetrac-mabshoff mannequin commented Sep 2, 2007

Hello folks,

for n in range(10,100): a=ModularSymbols(n,sign=1).decomposition(); print n, get_memory_usage()

causes (among other things) the following:

==5107== 111,264 (35,472 direct, 75,792 indirect) bytes in 1,478 blocks are definitely lost in loss record 2,758 of 2,944
==5107==    at 0x4A06019: operator new(unsigned long) (vg_replace_malloc.c:167)
==5107==    by 0x1F9AF2C0: std::vector<LinBox::GivPolynomial<Integer>*, std::allocator<LinBox::GivPolynomial<Integer>*> >& L
inBox::GivPolynomialRing<LinBox::UnparametricField<Integer>, Dense>::factor<std::vector<LinBox::GivPolynomial<Integer>*, std
::allocator<LinBox::GivPolynomial<Integer>*> > >(std::vector<LinBox::GivPolynomial<Integer>*, std::allocator<LinBox::GivPoly
nomial<Integer>*> >, std::vector<unsigned long, std::allocator<unsigned long> >&, LinBox::GivPolynomial<Integer> const&) (in
 /tmp/Work2/sage-2.8.3.rc3/local/lib/liblinboxwrap.so.0.0.0)
==5107==    by 0x1FA642A2: LinBox::GivPolynomial<Integer>& LinBox::cia<LinBox::GivPolynomial<Integer>, LinBox::DenseMatrix<L
inBox::UnparametricField<Integer> > >(LinBox::GivPolynomial<Integer>&, LinBox::DenseMatrix<LinBox::UnparametricField<Integer
> > const&, LinBox::BlasEliminationTraits const&) (in /tmp/Work2/sage-2.8.3.rc3/local/lib/liblinboxwrap.so.0.0.0)
==5107==    by 0x1FA64B97: LinBox::GivPolynomial<Integer>& LinBox::charpoly<LinBox::GivPolynomial<Integer>, LinBox::DenseMat
rix<LinBox::UnparametricField<Integer> > >(LinBox::GivPolynomial<Integer>&, LinBox::DenseMatrix<LinBox::UnparametricField<In
teger> > const&, LinBox::RingCategories::IntegerTag const&, LinBox::BlasEliminationTraits const&) (in /tmp/Work2/sage-2.8.3.
rc3/local/lib/liblinboxwrap.so.0.0.0)
==5107==    by 0x1FA64BD9: LinBox::GivPolynomial<Integer>& LinBox::charpoly<LinBox::GivPolynomial<Integer>, LinBox::Unparame
tricField<Integer>, LinBox::RingCategories::IntegerTag>(LinBox::GivPolynomial<Integer>&, LinBox::DenseMatrix<LinBox::Unparam
etricField<Integer> > const&, LinBox::RingCategories::IntegerTag const&, LinBox::HybridSpecifier const&) (in /tmp/Work2/sage
-2.8.3.rc3/local/lib/liblinboxwrap.so.0.0.0)
==5107==    by 0x1FA64C0D: LinBox::GivPolynomial<Integer>& LinBox::charpoly<LinBox::DenseMatrix<LinBox::UnparametricField<In
teger> >, LinBox::GivPolynomial<Integer>, LinBox::HybridSpecifier>(LinBox::GivPolynomial<Integer>&, LinBox::DenseMatrix<LinB
ox::UnparametricField<Integer> > const&, LinBox::HybridSpecifier const&) (in /tmp/Work2/sage-2.8.3.rc3/local/lib/liblinboxwr
ap.so.0.0.0)
==5107==    by 0x1FA64C39: LinBox::GivPolynomial<Integer>& LinBox::charpoly<LinBox::DenseMatrix<LinBox::UnparametricField<In
teger> >, LinBox::GivPolynomial<Integer> >(LinBox::GivPolynomial<Integer>&, LinBox::DenseMatrix<LinBox::UnparametricField<In
teger> > const&) (in /tmp/Work2/sage-2.8.3.rc3/local/lib/liblinboxwrap.so.0.0.0)
==5107==    by 0x1F9AF567: linbox_integer_dense_charpoly (in /tmp/Work2/sage-2.8.3.rc3/local/lib/liblinboxwrap.so.0.0.0)
==5107==    by 0x1F6CB0F6: __pyx_f_6linbox_20Linbox_integer_dense__poly(_object*, _object*) (linbox.cpp:1124)
==5107==    by 0x4156A2: PyObject_Call (abstract.c:1860)
==5107==    by 0x47DB71: PyEval_CallObjectWithKeywords (ceval.c:3433)
==5107==    by 0x1F6C9E66: __pyx_f_6linbox_20Linbox_integer_dense_charpoly(_object*, _object*) (linbox.cpp:963)

This looks very ugly. I suspect it can have something to do with the changes made to LinBox in order to compile with gcc 4.2. Those did change some allocation behavior.

Cheers,

Tagged for 2.8.4

Michael

Component: memleak

Issue created by migration from https://trac.sagemath.org/ticket/560
@sagetrac-mabshoff sagetrac-mabshoff mannequin added this to the sage-2.8.4 milestone Sep 2, 2007
@sagetrac-mabshoff sagetrac-mabshoff mannequin added t: bug labels Sep 2, 2007
@sagetrac-mabshoff sagetrac-mabshoff mannequin self-assigned this Sep 2, 2007
@sagetrac-mabshoff sagetrac-mabshoff mannequin reopened this Sep 7, 2007
@williamstein williamstein modified the milestones: sage-2.8.4, sage-2.9 Sep 7, 2007
@sagetrac-mabshoff
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Mannequin Author

sagetrac-mabshoff mannequin commented Apr 1, 2008

comment:7

This is likely to be fixed. Please valgrind and report back.

Cheers,

Michael

@sagetrac-mabshoff sagetrac-mabshoff mannequin changed the title memleak in LinBox::GivPolynomial exposed by ModularSymbols(n,sign=1).decomposition() [probabyl fixed] memleak in LinBox::GivPolynomial exposed by ModularSymbols(n,sign=1).decomposition() Apr 1, 2008
@sagetrac-mabshoff
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sagetrac-mabshoff mannequin commented Apr 2, 2008

comment:8

Valgrind says: Fixed in Sage 2.11.

Cheers,

Michael

@sagetrac-mabshoff sagetrac-mabshoff mannequin closed this as completed Apr 2, 2008
vbraun pushed a commit to vbraun/sage that referenced this issue Apr 11, 2024
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<a href="https://redirect.github.com/myrotvorets/set-commit-status-
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<a href="https://redirect.github.com/myrotvorets/set-commit-status-
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<li>chore(deps): update github/codeql-action digest to 6a28655 by <a
href="https://github.com/renovate"><code>@​renovate</code></a> in <a
href="https://redirect.github.com/myrotvorets/set-commit-status-
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<li>chore(deps): update dependency <code>@​types/node</code> to v20.6.3
by <a href="https://github.com/renovate"><code>@​renovate</code></a> in
<a href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/451">myrotvorets/set-commit-status-action#451</a></li>
<li>chore(deps): update actions/checkout digest to 8ade135 by <a
href="https://github.com/renovate"><code>@​renovate</code></a> in <a
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<li>chore(deps): update actions/checkout action to v4.1.0 by <a
href="https://github.com/renovate"><code>@​renovate</code></a> in <a
href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/453">myrotvorets/set-commit-status-action#453</a></li>
<li>chore(deps): update dependency <code>@​types/node</code> to v20.6.4
by <a href="https://github.com/renovate"><code>@​renovate</code></a> in
<a href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/454">myrotvorets/set-commit-status-action#454</a></li>
<li>chore(deps): update dependency <code>@​types/node</code> to v20.6.5
by <a href="https://github.com/renovate"><code>@​renovate</code></a> in
<a href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/455">myrotvorets/set-commit-status-action#455</a></li>
<li>chore(deps): lock file maintenance by <a
href="https://github.com/renovate"><code>@​renovate</code></a> in <a
href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/456">myrotvorets/set-commit-status-action#456</a></li>
<li>chore(deps): update dependency <code>@​types/node</code> to v20.7.0
by <a href="https://github.com/renovate"><code>@​renovate</code></a> in
<a href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/457">myrotvorets/set-commit-status-action#457</a></li>
<li>chore(deps): update github/codeql-action digest to ddccb87 by <a
href="https://github.com/renovate"><code>@​renovate</code></a> in <a
href="https://redirect.github.com/myrotvorets/set-commit-status-
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<li>chore(deps): update dependency <code>@​types/node</code> to v20.7.1
by <a href="https://github.com/renovate"><code>@​renovate</code></a> in
<a href="https://redirect.github.com/myrotvorets/set-commit-status-
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by <a href="https://github.com/renovate"><code>@​renovate</code></a> in
<a href="https://redirect.github.com/myrotvorets/set-commit-status-
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<a href="https://redirect.github.com/myrotvorets/set-commit-status-
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<a href="https://redirect.github.com/myrotvorets/set-commit-status-
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<a href="https://redirect.github.com/myrotvorets/set-commit-status-
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<li>chore(deps): update dependency typescript to ^5.2.2 by <a
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<li>chore(deps): update github/codeql-action digest to fdcae64 by <a
href="https://github.com/renovate"><code>@​renovate</code></a> in <a
href="https://redirect.github.com/myrotvorets/set-commit-status-
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<li>chore(deps): update dependency <code>@​types/node</code> to ^20.8.4
by <a href="https://github.com/renovate"><code>@​renovate</code></a> in
<a href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/469">myrotvorets/set-commit-status-action#469</a></li>
<li>chore(deps): update dependency <code>@​actions/github</code> to v6
by <a href="https://github.com/renovate"><code>@​renovate</code></a> in
<a href="https://redirect.github.com/myrotvorets/set-commit-status-
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<li>chore(deps): update dependency <code>@​myrotvorets/eslint-config-
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href="https://github.com/renovate"><code>@​renovate</code></a> in <a
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<li>chore(deps): update github/codeql-action digest to d90b8d7 by <a
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href="https://redirect.github.com/myrotvorets/set-commit-status-
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<li>chore(deps): update dependency <code>@​types/node</code> to ^20.8.5
by <a href="https://github.com/renovate"><code>@​renovate</code></a> in
<a href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/473">myrotvorets/set-commit-status-action#473</a></li>
<li>chore(deps): update dependency <code>@​myrotvorets/eslint-config-
myrotvorets-ts</code> to ^2.22.5 by <a
href="https://github.com/renovate"><code>@​renovate</code></a> in <a
href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/474">myrotvorets/set-commit-status-action#474</a></li>
<li>chore(deps): update github/codeql-action digest to 0116bc2 by <a
href="https://github.com/renovate"><code>@​renovate</code></a> in <a
href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/475">myrotvorets/set-commit-status-action#475</a></li>
<li>chore(deps): update dependency <code>@​types/node</code> to ^20.8.6
by <a href="https://github.com/renovate"><code>@​renovate</code></a> in
<a href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/476">myrotvorets/set-commit-status-action#476</a></li>
<li>chore(deps): lock file maintenance by <a
href="https://github.com/renovate"><code>@​renovate</code></a> in <a
href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/477">myrotvorets/set-commit-status-action#477</a></li>
<li>fix(deps): roll back actions/checkout action by <a
href="https://github.com/renovate"><code>@​renovate</code></a> in <a
href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/478">myrotvorets/set-commit-status-action#478</a></li>
<li>chore(deps): update actions/checkout action to v4.1.1 by <a
href="https://github.com/renovate"><code>@​renovate</code></a> in <a
href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/479">myrotvorets/set-commit-status-action#479</a></li>
<li>chore(deps): update dependency <code>@​types/node</code> to ^20.8.7
by <a href="https://github.com/renovate"><code>@​renovate</code></a> in
<a href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/480">myrotvorets/set-commit-status-action#480</a></li>
<li>chore(deps): update dependency <code>@​vercel/ncc</code> to ^0.38.1
by <a href="https://github.com/renovate"><code>@​renovate</code></a> in
<a href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/481">myrotvorets/set-commit-status-action#481</a></li>
<li>chore(deps): update github/codeql-action digest to 49abf0b by <a
href="https://github.com/renovate"><code>@​renovate</code></a> in <a
href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/482">myrotvorets/set-commit-status-action#482</a></li>
<li>chore(deps): lock file maintenance by <a
href="https://github.com/renovate"><code>@​renovate</code></a> in <a
href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/483">myrotvorets/set-commit-status-action#483</a></li>
<li>chore(deps): update actions/setup-node action to v3.8.2 by <a
href="https://github.com/renovate"><code>@​renovate</code></a> in <a
href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/484">myrotvorets/set-commit-status-action#484</a></li>
<li>chore(deps): update actions/setup-node action to v4 by <a
href="https://github.com/renovate"><code>@​renovate</code></a> in <a
href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/485">myrotvorets/set-commit-status-action#485</a></li>
<li>chore(deps): update dependency <code>@​types/node</code> to ^20.8.8
by <a href="https://github.com/renovate"><code>@​renovate</code></a> in
<a href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/486">myrotvorets/set-commit-status-action#486</a></li>
<li>chore(deps): update dependency <code>@​types/node</code> to ^20.8.9
by <a href="https://github.com/renovate"><code>@​renovate</code></a> in
<a href="https://redirect.github.com/myrotvorets/set-commit-status-
action/pull/487">myrotvorets/set-commit-status-action#487</a></li>
</ul>
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</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a href="https://github.com/myrotvorets/set-commit-status-action/com
mit/3730c0a348a2ace3c110851bed53331bc6406e9f"><code>3730c0a</code></a>
2.0.1</li>
<li><a href="https://github.com/myrotvorets/set-commit-status-action/com
mit/3f8748897d475c745f447c5fa75e7f5674ac9a0f"><code>3f87488</code></a>
Merge pull request <a href="https://redirect.github.com/myrotvorets/set-
commit-status-action/issues/561">sagemath#561</a> from markmssd/patch-1</li>
<li><a href="https://github.com/myrotvorets/set-commit-status-action/com
mit/e511e137cb1072f0f1bfd1d994bb46be232938c3"><code>e511e13</code></a>
update dist</li>
<li><a href="https://github.com/myrotvorets/set-commit-status-action/com
mit/d2f4570483e3a5061bed1c9bbeb910eb7f86dfd7"><code>d2f4570</code></a>
Fix typo</li>
<li><a href="https://github.com/myrotvorets/set-commit-status-action/com
mit/0fc3a4eb21c32bc8ac6308dcc33c25ffd6ddf6e9"><code>0fc3a4e</code></a>
Merge pull request <a href="https://redirect.github.com/myrotvorets/set-
commit-status-action/issues/559">sagemath#559</a> from
myrotvorets/renovate/linters</li>
<li><a href="https://github.com/myrotvorets/set-commit-status-action/com
mit/0478c8a5acb9b00c9801b1307e4afaa8a7e32598"><code>0478c8a</code></a>
Merge pull request <a href="https://redirect.github.com/myrotvorets/set-
commit-status-action/issues/560">sagemath#560</a> from
myrotvorets/renovate/lock-file-maintenance</li>
<li><a href="https://github.com/myrotvorets/set-commit-status-action/com
mit/10b74bf16aed90fc68347b4ecc55a6a3ec477ec7"><code>10b74bf</code></a>
chore(deps): lock file maintenance</li>
<li><a href="https://github.com/myrotvorets/set-commit-status-action/com
mit/028919596fd7baf88d1dc494bf0f06223815bd29"><code>0289195</code></a>
chore(deps): update dependency <code>@​myrotvorets/eslint-config-
myrotvorets-ts</code> to v...</li>
<li><a href="https://github.com/myrotvorets/set-commit-status-action/com
mit/ee733d3c0a3b8df8963503d59660273616b1b211"><code>ee733d3</code></a>
chore(deps): update dependency <code>@​types/node</code> to
v20.11.19</li>
<li><a href="https://github.com/myrotvorets/set-commit-status-action/com
mit/4921e31b3636a43a2d156607c2d813e9060b1860"><code>4921e31</code></a>
chore(deps): update github/codeql-action digest to 3796146</li>
<li>Additional commits viewable in <a
href="https://github.com/myrotvorets/set-commit-status-
action/compare/v2.0.0...v2.0.1">compare view</a></li>
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URL: sagemath#37475
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