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Comment out some lines which may be causing a channel race condition #201

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Merged
merged 1 commit into from
Sep 19, 2025
Merged

Comment out some lines which may be causing a channel race condition #201

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12 changes: 6 additions & 6 deletions subworkflows/local/input_check.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -162,12 +162,12 @@ workflow INPUT_CHECK {
}

// Remove any invalid lineages from precomputed_busco
ch_busco_lineages_list = ch_busco_lineages.flatten()
ch_parsed_busco_filtered = ch_parsed_busco
.filter { meta, path ->
ch_busco_lineages.contains(meta.lineage)
}
ch_parsed_busco_filtered = ch_parsed_busco_filtered.ifEmpty { Channel.value([]) }
// ch_busco_lineages_list = ch_busco_lineages.flatten()
// ch_parsed_busco_filtered = ch_parsed_busco
// .filter { meta, path ->
// ch_busco_lineages.contains(meta.lineage)
// }
// ch_parsed_busco_filtered = ch_parsed_busco_filtered.ifEmpty { Channel.value([]) }

//
// Get the BUSCO path if set
Expand Down