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@gagnonanthony gagnonanthony released this 19 Aug 18:34
· 4 commits to main since this release
0.3.0
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Release 0.3.0

Brand new release 🎉 !

This release includes many new features, most notably the GPU profile, enabling GPU acceleration for eddy, tracking, and BIBSnet! The pipeline now supports a unified atlas scheme (either the built-in Brainnetome atlas or external user-supplied atlases) across the full developmental age range (more details are available in the documentation). Additionally, reading BIDS datasets now uses nf-bids, enabling faster loading and more complete BIDS support. Other (and not less important) changes are summarized below:

Added

  • Changed segmentation in young participants to use BIBSnet and infant freesurfer (#128)
  • Now use nf-bids plugin to read BIDS dataset for faster and more efficient data collection (#124)
  • Add GPU support via a config profile for module eddy and localtracking (#121)
  • Add support for user-defined external atlases in ‘fsLR‘ 32k space and simply mapping from template to subject space (#120)
  • Add RMSE and NRMSE maps to freewater and noddi output (#118)
  • Support for nextflow 26.04.0 ([#116])
  • Quality control section for connectivity data ([#116])
  • Quality control visualization section for bundles ([#116])
  • Improved visualization of cortical/subcortical segmentation results in native subject space ([#116])

Fixed

  • Issues when multiple anatomical runs were found and not linked with the DWI acquisition(s) + tests for bidsignore (#126)
  • Issues where reconst_fw_noddi would use too much RAM causing java heap errors (#118)
  • Issues where NaN values would appear following eddy and were making amico models fail due to invalid voxels. NaN values are now quantified, reported, and converted to 0.

Changed

  • Update to nf-core template 4.1.0 (#129)
  • Update to nf-core template 4.0.3 (#127)
  • Move to parameter typing and bump minimal nextflow version to 26.04.0 (#122)
  • Update to nf-core template 4.0.2 (#117)

Removed

  • Remove M-CRIB-S as a segmentation method for younger participants in favor of BIBSnet and infantfs (#128)

Full Changelog: 0.2.2...0.3.0

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