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Shintaro Katayama edited this page Apr 22, 2015
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STRTprep (https://github.com/shka/STRTprep) is an open-source software package for analysis of STRT RNA-seq data. The version 2 contains preprocessing step of the sequenced raw reads, alignments, quantitation, quality check, and moreover statistical test of the differential expression. The version 3 contains TFE-based quantification. This package can run on both Linux and OSX.
The current version is 1; users can "try" the version 2 and 3.