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Installation

This instruction is for the version 2.0.0 or later.

For installation of the basal softwares to prepare your (copy of) STRTprep, check the following requirements; but you do not need to install Homebrew or Linuxbrew themselves into your system.

• OSX - Check Requirements of Homebrew, and install Command Line Tool for Xcode.

xcode-select --install on your Terminal.app, for easy install of Command Line Tools.

• Linux - Check Dependencies of Linuxbrew.

Moreover, you might need more packages as follows.

• mysql-devel (for kent-tools on CentOS)
• imake (for openssl on CentOS)
• python-setuptools (for cmake on CentOS)

Then clone STRTprep to your disk with a name as you like - STRTprep.test for example.

git clone https://github.com/shka/STRTprep.git STRTprep.test
cd STRTprep.test

There is an installation script for additional softwares. The script installs Homebrew or Linuxbrew, and more softwares to run analysis within your STRTprep.

bin/install.sh

When you failed the installation, once remove the installation folder by rm -rf .homebrew, then retry again.

You can install mariadb (MySQL) by yourself, when it is difficult to install via the installation script.