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Shintaro Katayama edited this page Nov 2, 2017 · 5 revisions

diffexp_heatmap plugin complains R library installation

There are multiple package installation issues on 2017-11-02. Please change the line 6 of plugins/heatmap_diffexp.R as below, then retry plugins_gene again. It will be solved when the packages are corrected.

diff --git a/plugins/heatmap_diffexp.R b/plugins/heatmap_diffexp.R
index 975ccac..f53662b 100755
--- a/plugins/heatmap_diffexp.R
+++ b/plugins/heatmap_diffexp.R
@@ -3,7 +3,7 @@
 source('Rlib/STRTprepHelper.R', chdir=T)
 helper <- STRTprepHelper$newPlugin(
   name='heatmap_diffexp',
-  required_packages=c('renozao/pkgmaker@develop', 'renozao/NMF'))
+  required_packages=c('ganesh-krishnan/nloptr', 'lme4', 'renozao/pkgmaker@develop', 'renozao/NMF'))
 options <- helper$options
 samples <- helper$samples

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