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Add T2w dorsal rootlets labels #158

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Merged
merged 7 commits into from
Mar 4, 2025
Merged

Add T2w dorsal rootlets labels #158

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74b67aa
Add rootlets ground truth labels for 21 images. These 21 images were …
valosekj Feb 13, 2024
50e011c
Add rootlets ground truth labels for 3 images. These labels come from…
valosekj Feb 13, 2024
cb54bc7
Do NOT use 'desc-rater' at the filenames end
valosekj Mar 25, 2024
32fd30b
Merge branch 'master' into jv/add_rootlets_labels
mguaypaq Mar 28, 2024
ed16263
Do NOT use 'desc-staple' at the filenames end
valosekj Apr 3, 2024
859c228
Merge branch 'master' into jv/add_rootlets_labels
valosekj Mar 4, 2025
3400331
reorient rootlets labels to RPI
valosekj Mar 4, 2025
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11 changes: 11 additions & 0 deletions derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s30905--dd7c35eead8633437e22e322bd218a072c1df6a599c1acb7275fb03c894f8a69.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater1_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Theo Mathieu",
"Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater1_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s231653--b98667c95501ec8caa15dfd8af6ba341c93ebd6a78afe7de25c5c30cd6ce7e3b.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater2_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Raphaëlle Schlienger",
"Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater2_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s231689--1b18e0d5c2343d2b62668f0887de38c3d41a03be24cd1bc6d43e12feb6558b8d.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater3_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valošek",
"Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater3_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s231042--0b21759520fb60292eb31838a62454690d0c145b3db0fdb69bed080a90f94734.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater4_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Olivia Kowalczyk",
"Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater4_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s232254--7556c30d50406d37e8888811117ac6ebe66b886f277b726dcd21437ad19cf4ac.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-staple_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "STAPLE",
"Description": "Reference ground truth label (created using the STAPLE algorithm) of dorsal rootlets C2-C8 used to test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-staple_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s30359--09054cffdd545b4d10f3bfbeca5c8cbabe2574471246ad83a025b3c88ae8db88.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s30481--647412f2f51bf7d488a170aebde1ff151529b0bf68d90e015fcfed49cf4ebbee.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s31049--db34f7e26d13b6776f6762b1ffd42994b6876f87542209d6695949f68d09148e.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s31144--467d9c5b800b1b11f2a7e3536b6a560825a1a6287df78813a60aa1e1ec974655.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s30582--e68f01fde503a89af92e92bf3d7abf474a5456b1b97dbb12ccff188ef7852520.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s31417--6caaafbda397ecf0695c1a3be70b39463bf2d3a11eec7c24084931d64092a538.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s30727--a50b1953a1537b18beb291360395d1bb883b004753e7725456cecc5e9e571ffc.nii.gz
11 changes: 11 additions & 0 deletions ...ives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater1_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Theo Mathieu",
"Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions ...es/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater1_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s233953--0185e9268c24f4bb9d1df3e188e5b360f1f01af871351f0ed64d811f8d4526b9.nii.gz
11 changes: 11 additions & 0 deletions ...ives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater2_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Raphaëlle Schlienger",
"Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions ...es/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater2_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s233353--df9e8b3a067d2f291b2eb9f029ba3d8d95df28a76a3438df3c16d575361bb3e0.nii.gz
11 changes: 11 additions & 0 deletions ...ives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater3_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valošek",
"Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions ...es/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater3_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s233966--079c08a9cb53d0ba7a6c26594d9d89f11ce5a85738d87cb5a15852275a1b002e.nii.gz
11 changes: 11 additions & 0 deletions ...ives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater4_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Olivia Kowalczyk",
"Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions ...es/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater4_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s235123--4855ba98adffc95d944223ad1d30550579dd8f737320ffb2b916d573104899bb.nii.gz
11 changes: 11 additions & 0 deletions ...ives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-staple_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "STAPLE",
"Description": "Reference ground truth label (created using the STAPLE algorithm) of dorsal rootlets C2-C8 used to test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions ...es/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-staple_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s32057--9cc8155137f7d4b3ec99e1c9452ec8f22c246d97ec24dd182bdf97193b35e375.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s30890--7fc1f8a9165055bfea63202b76e9f8877d0858dff1ba2ed62dd2633e6e243d8d.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s31530--bd08862d93b2c46a25f00f88097313fd68575e96d918e6c839205dae01b36257.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s31253--8c83a3290e61995c9a51f2831985d61088ae29c61d52877767550439dab24d4f.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s70190--2318b499e290c06139beae2ee73eaa6985b04cdfb99ec41d6c8d0103a8bf5047.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater1_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
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1 change: 1 addition & 0 deletions ...atives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater1_label-rootlets_dseg.nii.gz
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11 changes: 11 additions & 0 deletions derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater2_label-rootlets_dseg.json
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1 change: 1 addition & 0 deletions ...atives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater2_label-rootlets_dseg.nii.gz
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1 change: 1 addition & 0 deletions ...atives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater3_label-rootlets_dseg.nii.gz
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