moves GetToolConfigForMCPServer into separate package for easier testing and reducing code in controllers layer
#2344
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There is a lot of code that is inside the controllers package. This PR moves the
GetToolConfigForMCPServer()function into a separate package for now (will probably get moved again in future when codebase architecture has become more stable) to keep things as small as possible and testable. This also removes the possible circular dependency loop that will happen in future refactoring changes relating to the RunConfig.