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Attention is great but all i need now is data
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Attention is great but all i need now is data
  • National Laboratory for Scientific Computing (LNCC/MCTI) @gmmsb-lncc
  • 11:14 (UTC -03:00)

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MedChem

64 repositories

Public package repository for the Datagrok.ai platform

TypeScript 67 28 Updated Mar 4, 2026

Molecular filtering for drug discovery.

Python 73 9 Updated May 19, 2025

Modern and fast molecular analysis and modeling library for C++ and Python

C++ 35 8 Updated Apr 21, 2025
Jupyter Notebook 237 27 Updated Dec 9, 2025
Jupyter Notebook 16 2 Updated Jul 7, 2024

An automated scoring function to facilitate and standardize the evaluation of goal-directed generative models for de novo molecular design

Python 225 34 Updated Jan 20, 2026

A Python package for processing molecules with RDKit in scikit-learn

Jupyter Notebook 215 14 Updated Mar 4, 2026

Foster the development of impactful AI models in drug discovery.

Python 140 11 Updated Aug 22, 2025

TeachOpenCADD: a teaching platform for computer-aided drug design (CADD) using open source packages and data

Jupyter Notebook 968 225 Updated Mar 2, 2026

Deep Learning-based Bioisosteric Replacements for Optimization of Multiple Molecular Properties

Jupyter Notebook 28 4 Updated Dec 3, 2025

Some benchmarking examples

Jupyter Notebook 1 Updated Jul 4, 2024

Protein Ligand INteraction Dataset and Evaluation Resource

Python 274 19 Updated Feb 21, 2026

PINDER: The Protein INteraction Dataset and Evaluation Resource

Python 152 9 Updated Nov 15, 2024

Language models for drug discovery using torchrl

Python 115 16 Updated Sep 16, 2025

Combinatorial antibiotic generation

Jupyter Notebook 195 41 Updated Jan 13, 2026

A collection of QM data for training potential functions

Python 191 10 Updated Feb 25, 2026

PDBFixer fixes problems in PDB files

Python 626 128 Updated Oct 30, 2025

An exploration strategy improves the diversity of de novo drug design using deep reinforcement learning

Python 2 1 Updated Sep 30, 2022

Deep learning toolkit for Drug Design with Pareto-based Multi-Objective optimization in Polypharmacology

Python 217 69 Updated Jul 6, 2023

De Novo Drug Design with RNNs and Transformers

Jupyter Notebook 172 26 Updated Feb 19, 2026

Official Python client for accessing ChEMBL API

Python 436 101 Updated Jan 26, 2025

Official code repository of < CBGBench: Fill in the Blank of Protein-Molecule Complex Binding Graph >

Python 323 38 Updated Sep 14, 2025

This repository is the official code source of PPFlow: Target-Aware Peptide Design with Torsional Flow Matching (ICML2024)

Python 90 12 Updated May 17, 2025

The Open Forcefield Toolkit provides implementations of the SMIRNOFF format, parameterization engine, and other tools. Documentation available at http://open-forcefield-toolkit.readthedocs.io

Python 383 102 Updated Feb 25, 2026

Fast and scalable uncertainty quantification for neural molecular property prediction, accelerated optimization, and guided virtual screening.

Python 130 17 Updated Jul 29, 2021

mmCIF Core Access Library

C++ 50 14 Updated Mar 1, 2026

Common shared Python I/O modules

Python 8 6 Updated Dec 2, 2025

Toward High-Accuracy Open-Source Biomolecular Structure Prediction.

Python 1,679 233 Updated Mar 3, 2026

AlphaFold 3 inference pipeline.

Python 7,662 1,126 Updated Feb 25, 2026

Algorithms to analyze and predict molecular structures

Python 24 6 Updated Jul 4, 2025