Calcium Data Extraction and Analysis

pynapple collaborative data analysis (high level python scripts) 🍹

Fast Exact Spike Inference Via L0 Optimization

Calibrated inference of spiking from calcium ΔF/F data using deep networks

NeuroScale performs background noise removal, binning, scaling to standard normal distribution and addition of null cells of calcium imaging data.

Dimensionality reduction of calcium-imaged neuronal population activity

Method for separating overlapping calcium imaging signals

Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

Implementation of latent factor analysis via dynamical systems (LFADS) model with coordinated dropout (CD) and sample validation (SV)