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BioMedical Imaging
Self-guided notebook tutorials to help get started with IDC
A streaming and non-blocking API for reading and processing DICOM data
A J2K, JP2 and HTJ2K plugin for pylibjpeg
Resources for teaching/preparing to teach bioimage analysis
A curated list of awesome DICOM resources and libraries.
Interoperable web-based DICOM slide microscopy viewer and annotation tool
Anatomic Reconstruction for Generalizable UltraSound (ARGUS) AI: A library for point-of-care ultrasound AI using MONAI and ITK
Sample projects on working with AWS HealthImaging, an AWS service that allows you to store, analyze, and share medical images in the cloud at petabyte scale.
High-Throughput JPEG 2000 (HTJ2K) decoder for Node.js and browser
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
SAM-Med3D: An Efficient General-purpose Promptable Segmentation Model for 3D Volumetric Medical Image
An AI-powered open-source medical image analysis toolbox
[ACL 2024 Findings] MedAgents: Large Language Models as Collaborators for Zero-shot Medical Reasoning https://arxiv.org/abs/2311.10537
Segment Anything in Medical Images
GPU-accelerated Image Processing library for Python
SegMamba: Long-range Sequential Modeling Mamba For 3D Medical Image Segmentation
[IEEE TCSVT] Vivim: a Video Vision Mamba for Medical Video Segmentation
U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentation
An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
[CVPR2024 Highlight] Adapting Visual-Language Models for Generalizable Anomaly Detection in Medical Images
Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hierarchical relationships in the data.
Developing Generalist Foundation Models from a Multimodal Dataset for 3D Computed Tomography
uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)