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Stars

Zarr

Zarr, OME-Zarr NGFF, etc.
15 repositories

Scripts used to format data for upload to S3 and visualization in neuroglancer

Python 2 1 Updated Feb 12, 2024

Dynamically typed N-D expression system based on xtensor

C++ 25 6 Updated Oct 20, 2021

Zarr core protocol for storage and retrieval of N-dimensional typed arrays

104 32 Updated Sep 26, 2025

Implementation of the Zarr core protocol (version 2 and 3) based on xtensor.

C++ 47 10 Updated May 11, 2022

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

Python 225 66 Updated Feb 17, 2026

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

JavaScript 334 59 Updated Feb 1, 2026

Javascript implementation of Zarr

TypeScript 154 27 Updated Feb 20, 2026

Zarr filesystem backend for N5

Java 19 18 Updated Feb 12, 2026

Lightweight C++ and Python interface for datasets in zarr and N5 format

C++ 130 30 Updated Jan 9, 2026

An implementation of chunked, compressed, N-dimensional arrays for Python.

Python 1,919 383 Updated Feb 21, 2026

parquet based reference filesystem (for fsspec)

Python 5 2 Updated Nov 29, 2022

Create reference filesystem for collections of car files.

Python 2 1 Updated Jan 5, 2026

A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.

Python 66 17 Updated Feb 21, 2026

CUDA-compatible zarr stores and codecs for GPU-based I/O

Python 6 Updated Mar 25, 2025