I may be slow to respond.
Comp. biologist and data engineer. I study complex microbial communities and build pipelines/algorithms for their analysis.
@czbiohub @FischbachLab
- San Francisco
- http://www.microbiome.ninja
- @SunitJain
Pinned Loading
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FischbachLab/nf-reads-profiler
FischbachLab/nf-reads-profiler PublicNextflow pipeline to run Metaphlan3 and Humann3 on QC-ed reads.
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FischbachLab/nf-ninjamap2
FischbachLab/nf-ninjamap2 PublicComplete restructuring of the original ninjamap code
Python
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SuperMoM
SuperMoM PublicThis repo hosts code for the Super awesome Meta*omics Miner tool. WARNING: The code is no where near stable. The documentation is more like scribbles of the ideas in my head and probably won't make…
Perl
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tetramerFreqs/Binning
tetramerFreqs/Binning PublicScripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmons, B.C. Thomas, A.P. Yelton, and J.F. Banfield (2009). Comm…
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