This repository contains R and Python scripts used for single cell RNAseq analyses. Corresponding data files can be found in GEO (GSE150186).
WT-BRMKO-D10-Rep1.R - Fig 1e,f,g
WT-BrmKO-D4-D6-D10-Scanpy.py - Fig 1i,j and Fig 3c,d
URD-D4-D6-D10-lowBMP-downsampled.R - Fig 1k
WT-BrmKO-D0-only.R - Extended Data Fig 2g
WT-BrmKO-D0-D4-D6-D10.R - Extended Data Fig 2h
WT-Brg1KO-D4-D10.R - Extended Data Fig 3c,d,e
Brg1-BrmKO-D10-R-PCA.R - Extended Data Fig 3h
URD-D4-D6-D10-highlowBMP-downsampled.R - Extended Data Fig 8b,c,d