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v0.1.3 Features, Maintenance

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@Jenniliu12 Jenniliu12 released this 01 May 11:25
· 1 commit to main since this release
5e9b620

Enhancements

  • Added support for a custom ranking function in run_one_enrichment() and run_all_enrichment(), with tests
  • Added a mini gene dictionary (~2% of the original, ~75MB) for lightweight usage
  • Added FDR q-value metric to robust result output
  • New tutorial notebooks: 3 quick-start covering core functionalities and an advanced tutorial detailing all parameters and statistical relevance

Breaking changes

  • Removed multi_contrast computation from plot_significant_results(), run_all_enrichment_test(), check_robustness(), and get_robust_significant_results()
  • Removed simultaneous up- and downregulated enrichment computation

Maintenance

  • Made plotting packages optional dependencies
  • Improved code robustness via default arguments, assertions, and type hints
  • Restructured formatting and logging, unified parameter documentation
  • Updated documentation