tidymodels · EmilHvitfeldt · Oct 8, 2025 · Oct 8, 2025 · Oct 8, 2025 · Oct 8, 2025
diff --git a/.gitignore b/.gitignore
@@ -4,3 +4,4 @@ inst/doc
 .RData
 .DS_Store
 docs
+tests/testthat/Rplots.pdf
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -60,7 +60,7 @@ Config/testthat/edition: 3
 Encoding: UTF-8
 LazyData: true
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.3.2
+RoxygenNote: 7.3.3
 Collate: 
     'bound_prediction.R'
     'cal-apply-binary.R'
@@ -72,7 +72,7 @@ Collate:
     'cal-estimate-isotonic.R'
     'cal-estimate-linear.R'
     'cal-estimate-logistic.R'
-    'cal-estimate-multinom.R'
+    'cal-estimate-multinomial.R'
     'cal-estimate-utils.R'
     'cal-estimate-none.R'
     'cal-pkg-check.R'
@@ -84,8 +84,8 @@ Collate:
     'cal-utils.R'
     'cal-validate.R'
     'class-pred.R'
-    'conformal_infer.R'
     'conformal_infer_cv.R'
+    'conformal_infer_full.R'
     'conformal_infer_quantile.R'
     'conformal_infer_split.R'
     'data.R'

diff --git a/R/cal-estimate-multinom.R → R/cal-estimate-multinomial.R b/R/cal-estimate-multinom.R → R/cal-estimate-multinomial.R
diff --git a/R/conformal_infer.R → R/conformal_infer_full.R b/R/conformal_infer.R → R/conformal_infer_full.R
diff --git a/man/cal_estimate_multinomial.Rd b/man/cal_estimate_multinomial.Rd
diff --git a/man/control_conformal_full.Rd b/man/control_conformal_full.Rd
diff --git a/man/int_conformal_cv.Rd b/man/int_conformal_cv.Rd
diff --git a/man/int_conformal_full.Rd b/man/int_conformal_full.Rd
diff --git a/man/int_conformal_quantile.Rd b/man/int_conformal_quantile.Rd
diff --git a/man/int_conformal_split.Rd b/man/int_conformal_split.Rd
diff --git a/man/predict.int_conformal_full.Rd b/man/predict.int_conformal_full.Rd
diff --git a/man/probably-package.Rd b/man/probably-package.Rd
diff --git a/man/required_pkgs.cal_object.Rd b/man/required_pkgs.cal_object.Rd
diff --git a/man/required_pkgs.int_conformal_cv.Rd b/man/required_pkgs.int_conformal_cv.Rd
diff --git a/tests/testthat/_snaps/bound-prediction.md → tests/testthat/_snaps/bound_prediction.md b/tests/testthat/_snaps/bound-prediction.md → tests/testthat/_snaps/bound_prediction.md
diff --git a/tests/testthat/_snaps/cal-estimate-isotonic.md b/tests/testthat/_snaps/cal-estimate-isotonic.md
@@ -191,3 +191,20 @@
     x This function does not work with grouped data frames.
     i Apply `dplyr::ungroup()` and use the `.by` argument.
 
+# Non-default names used for estimate columns
+
+    Code
+      cal_estimate_isotonic(new_segment, Class, c(good, poor))
+    Message
+
+      -- Probability Calibration 
+      Method: Isotonic regression calibration
+      Type: Binary
+      Source class: Data Frame
+      Data points: 1,010
+      Unique Predicted Values: 78
+      Truth variable: `Class`
+      Estimate variables:
+      `good` ==> good
+      `poor` ==> poor
+
diff --git a/tests/testthat/_snaps/cal-estimate-linear.md b/tests/testthat/_snaps/cal-estimate-linear.md
@@ -128,38 +128,3 @@
       Warning:
       Too few unique observations for spline-based calibrator. Setting `smooth = FALSE`.
 
----
-
-    Code
-      sl_gam <- cal_estimate_linear(boosting_predictions_oob, outcome, smooth = TRUE)
-    Condition
-      Warning:
-      Too few unique observations for spline-based calibrator. Setting `smooth = FALSE`.
-
----
-
-    Code
-      sl_gam <- cal_estimate_linear(boosting_predictions_oob, outcome, .by = id,
-        smooth = TRUE)
-    Condition
-      Warning:
-      Too few unique observations for spline-based calibrator. Setting `smooth = FALSE`.
-      Warning:
-      Too few unique observations for spline-based calibrator. Setting `smooth = FALSE`.
-      Warning:
-      Too few unique observations for spline-based calibrator. Setting `smooth = FALSE`.
-      Warning:
-      Too few unique observations for spline-based calibrator. Setting `smooth = FALSE`.
-      Warning:
-      Too few unique observations for spline-based calibrator. Setting `smooth = FALSE`.
-      Warning:
-      Too few unique observations for spline-based calibrator. Setting `smooth = FALSE`.
-      Warning:
-      Too few unique observations for spline-based calibrator. Setting `smooth = FALSE`.
-      Warning:
-      Too few unique observations for spline-based calibrator. Setting `smooth = FALSE`.
-      Warning:
-      Too few unique observations for spline-based calibrator. Setting `smooth = FALSE`.
-      Warning:
-      Too few unique observations for spline-based calibrator. Setting `smooth = FALSE`.
-
-Original file line number
+Diff line change
@@ Expand Up / @@ -4,3 +4,4 @@ inst/doc @@
     .RData
     .DS_Store
     docs
+    tests/testthat/Rplots.pdf