The `crest4` python package can automatically assign taxonomic names to DNA sequences obtained from environmental sequencing.
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Updated
Jun 18, 2024 - Python
The `crest4` python package can automatically assign taxonomic names to DNA sequences obtained from environmental sequencing.
Prepare a report for taxonomic assignment based on 16S rRNA sequences, using BLAST.
The Microbial Co-occurrence Network Explorer
A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.
16s rRNA Sequencing Meta-analysis Reproducibility Tool (using mothur).
Reverse Complement PCR (RC-PCR_ Classification pipeline.
A general 16S rDNA sequencing analysis pipeline
The `pacmill` python package is a bioinformatics pipeline that is developed to process microbial 16S amplicon sequencing data and produce PDF reports detailing taxonomical assignments along with other statistics.
Next Generation Phylogenetic Microbiome Analysis Framework
List of sequencer runs; QC and run Info from each run, modular display of all existing (uploaded) types of info and statistics.
A novel taxonomy-independent deep learning microbiome approach allow for accuaret classification of human epithelial materials
process raw reads from ubiome
Chloroplast 16S removal from Metagenomics samples (or any NGS samples)
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