Warp T1 and tensor volumes with a given non-linear warp.nii.gz using ANTs.
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Updated
Dec 10, 2020 - Shell
Warp T1 and tensor volumes with a given non-linear warp.nii.gz using ANTs.
BASH scripts to extract information from FASTA files.
bash script to align and rename subtitles using ffsubsync
SLURM job temps @UAlbany
Bioinformatics N' Stuff
It is the Bash script for testing purposes. It facilitates writing performance tests on SSD with different partition alignment settings. It uses parted to create a partition, a config JSON file to provide parted with different partition alignment settings, and dd to test writing performance.
FA-based non linear ANTs registration of the tensor to the FMRIB58_FA_1mm.nii.gz template or the IITmean_FA template.
Some scripts to make your bioinformatics analyses reproducible and a bit easy 🤓
Tools for microscopic captures and focus stackshots (beta)
ANTs transformation and tractogram registration in MNI space, using as the reference template the MNI152 T1 at 1.25 mm. WARNING: all the given inputs should be in the same anatomical space.
nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
Whole genome sequence simulation of DUF1220 domains and testing of alignment strategies
scripts to align a given wave to its transcription using trained models by Kaldi
A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
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