Beyond conflict: intragenomic conflict predicts individual variation in altruistic behaviour.

This tutorial demonstrates best practices for processing whole genome sequence (WGS) and mRNA sequencing (mRNA-seq) reads for allele-specific transcriptomics analysis.

An R package to perform Spatial dissimilarity analysis in single cells

Allele-specific expression (ASE) for short tandem repeats (STRs)

aScan is a software tool for the determination of allele-specific-expression at the single individual level from matched RNA-Seq and genomic data.

Replicating the bioinformatics and statistics pipelines for allele-specific expression analysis of ovary tissue from sterile and reproductive reciprocally crossed honey bees as described in Galbraith et al. (2016). PNAS. https://www.pnas.org/content/113/4/1020

Integrated Mapping and Profiling of Allelically-expressed Loci with Annotations

HLAXPress performs estimation of allele-specific expression levels for HLA genes using UMIs.

Allele-specific analysis of RNA-seq and DNA-seq data

C++ Implementation of EMASE

early version of (Pipeline for detection of differential allelic imbalance from RNA-seq)

A complete Snakemake pipeline for detecting allele specific expression in RNA-seq

Workflow for analysis of healthy human kidney by snRNAseq and snATACseq