This is an automatic pipeline for analysis of amplicon sequence data including 16S, 18S and ITS. It wraps QIIME commands and complements them with additional analysis where QIIME is not good at, such as combine multiple sequencing runs, OTU clustering and chimeric removal with UP ARSE, alignment filtering with Gblock, removing Chloroplast sequen…

📢🎯 Generic typing tool from amplicons and/or in silico PCR

microhaplotype visualizer and analyzer

Utilities for analysis of multiplex amplicon sequencing data

This pipeline reconstructs the composition of species from 16S amplicon sequencing datasets.