Extract files from SIF file

Part of this project is apptainer recipe file formalizing build of CoLoRe as a containerized application.

Collection of Dockerfiles and Apptainer files used to create containers on Hoffman2

Apptainer container to test Hybrid MPICH on Slurm clusters

apptainer image for complete phylogenomics and evolutionary analysis

Just a list of Apptainer definition files maintained by the Biomed Applications Group

Various containers for setting up a Yocto build environment

A reproducible RNA-Seq analysis pipeline for Staphylococcus aureus under antibiotic stress, utilizing Nextflow and Singularity. It involves genome mapping, read counting, and statistical analysis to identify differentially expressed genes (DEGs) and generates key visualizations.

Build Docker container for BBTools and (optionally) convert to Apptainer/Singularity.

Build Docker container for HTSeq and (optionally) convert to Apptainer/Singularity

Build Docker container for FASTX Toolkit and (optionally) convert to Apptainer/Singularity.

Build Docker container for Subread package and (optionally) convert to Apptainer/Singularity.

ITK-SNAP software in apptainer

Containers Lessons

Example on how to leverage Singularity on HPC. Mirror of https://github.com/bencardoen/singularity_slurm_cuda

Build Docker container for BWA and (optionally) convert to Apptainer/Singularity.

Build Docker container for FastQ Screen software and (optionally) convert to Apptainer/Singularity.

recipe for Matlab 2016b in Debian jessie apptainer container

Apptainer container to test Hybrid Open MPI on Slurm clusters

GitHub Action to install Apptainer