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artic

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nf-core / viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

workflow nanopore virus pipeline nextflow assembly metagenomics variant-calling illumina oxford-nanopore amplicon viral ont nf-core long-read-sequencing artic covid-19 covid19 sars-cov-2

Updated Nov 8, 2024
Nextflow

replikation / poreCov

SARS-CoV-2 workflow for nanopore sequence data

workflow bioinformatics nanopore basecalling artic sars-cov-2 nanopore-data

Updated Sep 25, 2024
Nextflow

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