bcftools
Here are 27 public repositories matching this topic...
convert genotype array output into annotated IBD segments
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Sep 24, 2019 - Shell
The main aim of this little project is to compare the European allele frequencies of the 1k genomes project with the gnomad frequencies.
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May 4, 2017 - Python
This repository outlines steps to manage VCF files, including compressing, indexing, querying chromosomes, counting variants, and comparing multiple VCF files using BCFTools.
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Aug 8, 2024 - Shell
Scripts used on a cluster that demonstrate vcf file manipulation and preparation.
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Mar 9, 2020 - Shell
Merge in parallel, speeding up bcftools merge
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Oct 20, 2023 - Shell
This repository contains code related to a conservation genomics project focused on the king rail, a threatened marsh bird.
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Sep 22, 2024 - Shell
Convert SV VCFs to BED, a wrapper for bcftools query
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Jul 20, 2019 - Python
This script filters false positive alleles from poolseq VCF file created with bcftools.
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Jun 26, 2024 - Shell
a tool for quickly getting the correct bcftools command
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Jan 1, 2024 - Python
Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines
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Aug 19, 2024 - Python
This directory contains material that I've used in different courses
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Jan 13, 2021
1,674 S.cerevisiae genomics data
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Aug 20, 2024 - Shell
bcftools singularity container
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Nov 8, 2018 - Shell
Nextflow resequencing pipeline with bwa-mem and freebayes
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Jul 11, 2024 - Nextflow
VariantCaller is a wrapper for the 2022 gatk & bcftools best practices + phasing with WhatsHap.
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Apr 29, 2022 - Python
Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)
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Aug 3, 2024 - Python
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