Create a Bioconductor/R SDK for Arvados
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Updated
Nov 13, 2017 - R
Create a Bioconductor/R SDK for Arvados
A set of R scripts for the analysis of microbial profiles
Annotate CRISPR and shRNA screening libraries
Statistical Analysis of multiplexed CRISPR / shRNA Screens using MAGeCK (deprecated)
Rosette Detection with SVM
Bioinformatics pipelines developed while working at the dept of Obs & Gynae
👨🔬 Analysis Pipelines and Useful Tools
R package implementations and interfaces to In silico research group's bioinformatics toolbox inbix
Bioinformatics pipelines for project work in MICB405: Bioinformatics.
Bioinformatics pipeline for nanopore sequencing data
Integrative Differential Expression Analysis for Multiple EXperiments
Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set
A pipeline to estimate the rate of purifying selection acting on stop codons of ortholog clusters from OrthoDB.(Based on https://github.com/cseoighe/StopEvol)
Hunting for CMV and HHV-6 in cfDNA sequence
A nextflow pipeline to cluster sets of proteins.
🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
Curated list of analysis pipelines for biological & clinical interpretation of data-driven findings
DEEPEST-Fusion is a fusion detection algorithm specially designed for screening massive cancer sequencing databases
A simple script based on RSelenium that streamlines SWISSpalm use. Requires Java and the R package glue.
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