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8 public repositories
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DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
Updated
Aug 17, 2020
Python
End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning
Updated
Jan 23, 2020
Python
circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.
Updated
Aug 17, 2020
Python
🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts
Tool for indexing and querying back-splice junctions of circular RNAs (circRNAs) in RNA-Seq datasets
Updated
Mar 14, 2019
JavaScript
🐳 Docker image for CirComPara
Updated
May 2, 2020
Dockerfile
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
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