A pipeline for quick and dirty QC of your small RNA-seq libraries focused on piRNA.
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Updated
Mar 30, 2024 - C++
A pipeline for quick and dirty QC of your small RNA-seq libraries focused on piRNA.
A kernel-based distance calculator for protein sequences.
Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!
StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.
Fast sequence vectorization for metagenomics analysis. Converts input sequences into k-mer coverage vectors, fast! Read more detail in our paperhttps://doi.org/10.1093/bioinformatics/btaa441
Common bioinformatic tools in C/C++
PARamrfinder is a high performance parallel tool to predict allele-specific DNA methylation (ASM) in mammals in the absence of SNP data.
Split a multifasta file into many fasta files containing a single sequence, or extract a list of sequences/contigs. Supports compressed input and output files.
BLAST without Sys.Call()
MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
Bioinformatic Tool for pre-processing NGS technologies outputs
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 1.4
summarize and visualize the genotypes categories per sample in a VCF file
Linear-time de novo Long Read Assembler
fast and comprehensive k-mer counting package
A bioinformatics tool, named Sequence Similarity 3D
SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.
KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.
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