Useful NGS utilities for everyday use in the form of stand-alone tool.
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Updated
Dec 2, 2022 - Java
Useful NGS utilities for everyday use in the form of stand-alone tool.
Different Computations Solutions for Bioinformatics Problems from a bioinformatics course at Chalmers Institute of Technology
PoGo is a proteogenomic tool developed primarily by Christoph Schlaffner. PoGo's purpose is to map peptides identified through mass spectrometry to a given genome. My edits of the tool are in order to expand its functionality to allow for the input of novel peptides without protein-coding region (CDS) annotation. The program is open-source and a…
FLiCK - Format LeveragIng Compression frameworK
Solutions for bioinformatics problems on Rosalind.info in Java
Computer Science Infotainment. Tribute to the Article Series in Scientific American and their german release Spektrum der Wissenschaft
The Smith-Waterman algorithm finds the optimal alignment of two sequences using dynamic programming techniques; Smith-Waterman is commonly used for DNA sequence alignment
Scansite searches for motifs within proteins that are likely to be phosphorylated by specific protein kinases or bind to domains such as SH2 domains, 14-3-3 domains or PDZ domains.
Diffusion-limited aggregation (DLA) is the process whereby particles undergoing a random walk due to Brownian motion cluster together to form aggregates of such particles.
My solutions to problems from Rosalind.info to understand algorithmic problems in real life bioinformatics.
DNA Sequence Alignment with Dynamic Programming Implementation using the Needleman-Wunsch Algorithm and Smith-Waterman Algorithm.
Computing the Edge of the Mandelbrot Set with a Turing Machine
HemoPI is an in silico method to predict hemolytic property of peptide. It also allows users to design better therapeutic peptide analog with desirable hemolytic potencies
Scansite searches for motifs within proteins that are likely to be phosphorylated by specific protein kinases or bind to domains such as SH2 domains, 14-3-3 domains or PDZ domains.
TREND platform for protein function and evolution analysis.
Automated Reproducibility and Testing Environment for Licensed Software
the SBML module of BiVeS
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