Automated Reproducibility and Testing Environment for Licensed Software
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Updated
Jun 15, 2021 - Java
Automated Reproducibility and Testing Environment for Licensed Software
Computing the Edge of the Mandelbrot Set with a Turing Machine
PoGo is a proteogenomic tool developed primarily by Christoph Schlaffner. PoGo's purpose is to map peptides identified through mass spectrometry to a given genome. My edits of the tool are in order to expand its functionality to allow for the input of novel peptides without protein-coding region (CDS) annotation. The program is open-source and a…
Solutions for bioinformatics problems on Rosalind.info in Java
The Smith-Waterman algorithm finds the optimal alignment of two sequences using dynamic programming techniques; Smith-Waterman is commonly used for DNA sequence alignment
My solutions to problems from Rosalind.info to understand algorithmic problems in real life bioinformatics.
HemoPI is an in silico method to predict hemolytic property of peptide. It also allows users to design better therapeutic peptide analog with desirable hemolytic potencies
the SBML module of BiVeS
Scansite searches for motifs within proteins that are likely to be phosphorylated by specific protein kinases or bind to domains such as SH2 domains, 14-3-3 domains or PDZ domains.
Scansite searches for motifs within proteins that are likely to be phosphorylated by specific protein kinases or bind to domains such as SH2 domains, 14-3-3 domains or PDZ domains.
Useful NGS utilities for everyday use in the form of stand-alone tool.
Different Computations Solutions for Bioinformatics Problems from a bioinformatics course at Chalmers Institute of Technology
FLiCK - Format LeveragIng Compression frameworK
Computer Science Infotainment. Tribute to the Article Series in Scientific American and their german release Spektrum der Wissenschaft
TREND platform for protein function and evolution analysis.
Artificial Life Simulation of Bacteria Motion depending on DNA
DNA Sequence Alignment with Dynamic Programming Implementation using the Needleman-Wunsch Algorithm and Smith-Waterman Algorithm.
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