MemBrain : Membrane segmentation in 3D for cryo-ET (by @teamtomo)
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Updated
Jun 25, 2024 - Python
MemBrain : Membrane segmentation in 3D for cryo-ET (by @teamtomo)
CryoCARE : denoising tomograms for cryo-ET (by @juglab)
Python scripts to quantiatively describe Arp2/3 complex organization on travelling Actin Waves
Plugin to run MemBrain software within Scipion
Some scripts to facilitate subtomogram-averaging workflows.
A pipeline to detect domains in cryo-EM density map by parsing domains from AlphaFold databases and fitting into the map for the best hits.
Python package for segmentation and analysis of Cryo-ET
Python scritps for rendering and distance analysis of proteins (proteasome) and segmentations (poly-GA aggregates) in Cryo-ET
Cellular content mining and particle localization
A tool to normalize CryoET data by matching amplitude spectrums.
2D NN-based particle picking from sparse labels
A napari plugin for the DeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.
PyTorch implementation of "Open-set Recognition of Unseen Macromolecules in Cellular Electron Cryo-Tomograms by Soft Large Margin Centralized Cosine Loss"
TomoNet is a GUI based pipeline package focusing on cryoET and STA data processing
cryo-ET particle picking by representation and metric learning
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