cryo-et
Here are 32 public repositories matching this topic...
Python scripts to quantiatively describe Arp2/3 complex organization on travelling Actin Waves
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May 1, 2019 - Python
Some scripts to facilitate subtomogram-averaging workflows.
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Apr 26, 2024 - Python
Plugin to run MemBrain software within Scipion
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May 21, 2024 - Python
Subtomogram averaging tutorials
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Jun 12, 2024
A pipeline to detect domains in cryo-EM density map by parsing domains from AlphaFold databases and fitting into the map for the best hits.
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Jun 16, 2024 - Python
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Jan 28, 2022 - Python
Python package for segmentation and analysis of Cryo-ET
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Dec 3, 2017 - Python
Electron tomography toolkit: geometric picking and sub-volume averaging
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Oct 24, 2023 - C++
Denoising and segmentation networks for cryoET based on U-net architecture implemented in Pytorch
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Nov 10, 2022 - Jupyter Notebook
Python scritps for rendering and distance analysis of proteins (proteasome) and segmentations (poly-GA aggregates) in Cryo-ET
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Dec 10, 2019 - Python
Cellular content mining and particle localization
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Jan 30, 2024 - Python
A tool to normalize CryoET data by matching amplitude spectrums.
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Oct 17, 2021 - Python
A napari plugin for the DeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.
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Jun 1, 2024 - Python
2D NN-based particle picking from sparse labels
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Nov 12, 2023 - Python
PyTorch implementation of "Open-set Recognition of Unseen Macromolecules in Cellular Electron Cryo-Tomograms by Soft Large Margin Centralized Cosine Loss"
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Oct 14, 2020 - Python
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