An official implementation of PCRLv2 (pre-training and fine-tuning code are included).
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Updated
Sep 28, 2023 - Python
An official implementation of PCRLv2 (pre-training and fine-tuning code are included).
End-to-end Python CT volume preprocessing pipeline to convert raw DICOMs into clean 3D numpy arrays for ML. From paper Draelos et al. "Machine-Learning-Based Multiple Abnormality Prediction with Large-Scale Chest Computed Tomography Volumes."
Segmentation and Classification models for COVID CT scans (COVID, pneumonia, normal) based on Mask R-CNN.
A simple privacy-focused web panel in flask for labeling CT Scan's slices
CNN's for bone segmentation of CT-scans.
A COVID-19 CT Scan Dataset Applicable in Machine Learning and Deep Learning
Machine learning models for multi-organ, multi-disease prediction in chest CT volumes. From paper Draelos et al. "Machine-Learning-Based Multiple Abnormality Prediction with Large-Scale Chest Computed Tomography Volumes."
Deep CNN for performing 3D super resolution on CT/MRI scans
View volumetric (3D) medical images in Jupyter notebooks
Idiopathic pulmonary fibrosis (IPF) is a restrictive interstitial lung disease that causes lung function decline by lung tissue scarring. Although lung function decline is assessed by the forced vital capacity (FVC), determining the accurate progression of IPF remains a challenge. To address this challenge, we proposed Fibro-CoSANet, a novel end…
U-Net for biomedical image segmentation
A python class compatible with TensorFlow to perform data augmentation on 3D objects during CNN training.
In-depth motion analysis of mobile lung cancer tumors. Designed for 4D-CT scans of the thorax and provide valuable information for proton therapy treatment planning
Workflow-centred open-source fully automated lung volumetry in chest CT.
LUng CAncer Screeningwith Multimodal Biomarkers
Reconstruction of medical image data using DICOM format input data
A repository containing deep learning models and evaluation methods for enhancing medical image segmentation in Computed Tomography (CT) scans, with a focus on U-Net variants, nnUNet, and Swin-UNet architectures.
Image-to-image deep learning framework for MRI to porosity map translation
COVID-19 Classification from 3D CT Images
An implementation of a HIAS compatible xDNN classifier by Nitin Mane. Inspired by SARS-CoV-2 CT-scan dataset: A large dataset of real patients CT scans for SARS-CoV-2 identification by Eduardo Soares, Plamen Angelov, Sarah Biaso, Michele Higa Froes, Daniel Kanda Abe.
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