Mutation Mapping Analysis Pipeline for Pooled RNA-Seq
-
Updated
Jun 12, 2024 - R
#
danio-rerio
Here are 6 public repositories matching this topic...
This is a set of bash wrapper scripts for STAR that simplify it's setup and use with a set of pre-defined parameters.
-
Updated
Jun 13, 2023 - Shell
Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes
gem
genome
repeats
ngs
genome-annotation
genome-browser
bowtie
zebrafish
mappability
alignability
danio-rerio
tsslab
-
Updated
Nov 9, 2018 - Python
Independent project I undertook to perform a full ChIP-Seq analysis of the transcription factor Nanog in Zebrafish embryos.
linux
bash
high-performance-computing
chip-seq
histone-modifications
hisat2
sra
developmental-biology
zebrafish
danio-rerio
computational-genomics
deeptools
-
Updated
Aug 10, 2020
This code analyze the mortality (LC50) and General Morphological Score of embryos exposed to sediment and its pore water.
-
Updated
Sep 25, 2024 - R
The repository stores files that are used to determine homology between Mus musculus and Danio rerio genomes by analyzing synteny blocks.
r
chip-seq
regeneration
homology
circos-plot
danio-rerio
mus-musculus
tbx5
synteny-block
symap
cinteny
-
Updated
Feb 12, 2023 - HTML
Improve this page
Add a description, image, and links to the danio-rerio topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the danio-rerio topic, visit your repo's landing page and select "manage topics."