Simple Nextflow RNA-Seq pipeline

Differential gene expression analysis and pathway analysis of RNAseq data

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

A reproducible RNA-Seq analysis pipeline for Staphylococcus aureus under antibiotic stress, utilizing Nextflow and Singularity. It involves genome mapping, read counting, and statistical analysis to identify differentially expressed genes (DEGs) and generates key visualizations.