Automated synthetic biology protocols with ot2
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Updated
Jul 18, 2024 - Python
Automated synthetic biology protocols with ot2
Creates a construct developed by the Niles Lab at MIT, designed to deliver a 3' UTR post-transcriptional regulatory element payload to a specific given gene in Plasmodium falciparum.
A PCR primer tool for DNA assembly flows
a DNA assembly library
Scripts and pipelines by Merce Montoliu-Nerin
various tools that help with deep sequencing analysis
A route planner for DNA assembly
A Python library to assist with scripting bio-automation protocols
Open source web app for DNA design and management
DNAda is a web application that integrates the J5 DNA assembly software with robotic liquid handlers
⚗️ Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
🎨 Python library to plot multi-part genetic constructs
openjdk:8 based release of CANU, a PacBio assembler
The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology. PeerJ, 2022). It is meant to be the source for standalone server installation. https://doi.org/10.7717/peerj.13056
🏖️ The EGF Collection of Useful Bio Apps - Web demos of EGF software
💫 Computer-aided DNA assembly validation and identification from restriction digests.
🔗 Short overhangs design for DNA assembly
🌸 Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.
💣 Identify elements impairing success accross group experiments.
✂️ Design compact restriction sites arrays (python utility)
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