Command-line software designed to seek regular expressions within DNA sequences.
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Updated
May 15, 2024 - Java
Command-line software designed to seek regular expressions within DNA sequences.
Simulates and displays the optimization of a DNA sequence through natural selection, crossover, and mutation. Made in conjunction with the 2023 IGEM team at Ohio State University.
This is a Java desktop application, Database Management System (DNA Management System). Helps to match the DNA of the newly found missing people with the DNA database, also finds out if two samples match, enables adding, deleteing and vewing the databse records table.
Algorithm to get the associated gel electrophoresis of a give DNA segment or determine what DNA segment could have created a given gel electrophoresis
Hadoop Sequence Parser (HSP) library
A program that finds substrings within a list of several strings
Repeated DNA is what makes up a large portion of a species' genome, and some of these DNA elements are able to move within the genome, we refer to them as transposons and retrotransposons. Transposons in the DNA move from one location to another by a duplicating mechanism. When it comes to cancer cells, these DNA transposons can be used to intro…
A light tool for molecular biology written in Java. It finds cleavage sites for restriction endonucleases in FASTA or multi-FASTA DNA sequence files.
HCAT GUI is a visual tool to analyze and manipulate DNA sequence data.
HCAT CLI is a command line interface tool to analyze DNA sequence data.
Sequence Similarity and Identity Calculator (DNA + Protein)
Programming Task: Find all genes from one long strand of DNA
DNA Sequence Alignment with Dynamic Programming Implementation using the Needleman-Wunsch Algorithm and Smith-Waterman Algorithm.
PredicSites is a program allowing consensus patterns search on a DNA sequence.
This is a Java Project that gives you a valid 3 multiple ATG Gene in a DNA sequence file. IT takes one file as input and gives you the Gene Sequence in the DNA.
Implementation of space-saving three DNA sequences alignment
K-mer spectrum corrector based on Hadoop
The TJ Bioinformatics Toolkit (BITK) is software designed to aid in various forms of bioinformatics.
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