Implementation of LAVA algorithm in Seq language.
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Updated
Jan 14, 2021 - Python
Implementation of LAVA algorithm in Seq language.
DNA classification using Deep Learning MLP Classifier for finding E-Coli virus in Human
Jupyter notebooks for BFG-PCA related simulation and analysis.
Implementation of random algorithms
Package to parse DNA kit files, and import them into Laravel
A program to compute the optimal sequence alignment of two DNA strings
HCAT GUI is a visual tool to analyze and manipulate DNA sequence data.
LpSIM is a virtual platform for simulating the different stages of the Illumina sequencing library preparation workflow and the possible artefacts that may be introduced at each stage.
This was a project for my bioinformatics class. We studied a dynamic programming algorithm (& backtracking) for finding the most optimum pairwise alignment between two DNA sequences. This is that algorithm and backtracking to find one & then all the optimum alignments of two sequences (accepted in .fasta format). Implemented in swift.
This was a project for my bioinformatics class. We studied a couple of motif finding algorithms for finding a potential motif in n many randomly generated DNA sequences. This project 1) randomly generates n many DNA sequences 2) randomly generates a kmer 3) edits up to d many positions in that kmer & inserts that kmer (now motif) into each seque…
DNA CLASSIFICATION
In this repository I backup the pipelines I write for the project I am involved
R-package to analyse and quantify aberrations in DNA-sequencing data
Simple php script implementing a naive global alignment for dna sequences.
Assessing tumor heterogeneity in bulk tumor DNA. Simulation of reads from a phylogenetic prior.
Participant and Provider Engagement Portal - Investigating drug resistance, sensitivity and other NCI-sponsored cancer research
computational analysis for the ATRAID paper
This a repository for WPI BB2950 Molecular Biology B Term 2017
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