DNAnexus app mapping FASTQ reads (paired or unpaired) to a reference genome with the BWA-MEM algorithm

DNAnexus app running peddy v0.3.1 (https://github.com/brentp/peddy) to perform a run wide QC check that the assigned gender matches the sample

App to upload multiqc files to genomics server

DNAnexus app for uploading samples to the Congenica analysis platform

DNAnexus app generating a QC report on reads data

Runs the Illumina TSO500 local analysis app

App to upload TSO500 samples to Qiagen

DNAnexus app running MultiQC to generate run wide quality control (QC) using the outputs from MokaAMP, MokaPipe and MokaWES pipelines

This app calculates the readcount for a batch of samples for CNV calling using ExomeDepth.

The app creates a panel of normals for Exomedepth

DNAnexus app of Athena

DNAnexus implementation of duty_csv. To be used in conjunction with process_duty_csv

Performs CNV calling using ExomeDepth.