Methods overview with scripts looking at mtDNA and haplogroup association with CPTAC LUAD study.

Config files for my GitHub profile.

Perform RNA-seq data analysis with edgeR package of bioconductor

Personalized, annotated code for anyone working with RNA-seq data.

RNA sequencing processing and analysis to find differential expression

Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.

RNASeq and Call Variants

Rstudio files created during my internship at IAB. Internship supervised by Florent Chuffart.

A large-scale spectral counting data analysis using PAW pipeline, edgeR, R, and Jupyter notebooks

Transcriptome Analysis of Heat and Drought-Stressed Wheat

The Tasmanian devil is endangered due to Devil Facial Tumour Disease (DFTD), a contagious cancer with no current treatment. Previous study has investigated the anticancer properties of Tasmanian devil cathelicidins. This report intends to reproduce the enrichment analysis results of the study and further analyze their data.

Sea lion urine comparison with spectral counting.

Enhanced volcano plot using edgeR data

Galaxy wrappers for SARTools (Statistical Analysis of RNA-Seq Tools)

Analyses combining ATAC-seq, RRBS, and RNA-seq data for purple urchins

some scripts to process transcriptomics and Chip-seq data

Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.

Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.