#
edna
Here are 3 public repositories matching this topic...
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
workflow
nanopore
pipeline
nextflow
shotgun
filter
metagenomics
edna
microbiome
fastq
metabarcoding
long-reads
taxonomic-classification
de-identification
nf-core
short-reads
taxonomic-profiling
decontamination
-
Updated
Nov 8, 2024 - Nextflow
Amplicon sequencing analysis workflow using DADA2 and QIIME2
workflow
pipeline
nextflow
metagenomics
pacbio
edna
microbiome
iontorrent
illumina
metabarcoding
16s
rrna
its
18s
taxonomic-classification
amplicon-sequencing
qiime2
nf-core
taxonomic-profiling
-
Updated
Oct 25, 2024 - Nextflow
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