🎣 Bioconductor package for pathway enrichment and depletion analysis via a Fisher's exact test on custom test sets and annotations
-
Updated
Jul 12, 2021 - R
🎣 Bioconductor package for pathway enrichment and depletion analysis via a Fisher's exact test on custom test sets and annotations
Population-based pathway analysis of SNP-SNP coevolution
# PeerJ Special Issue on Seagrass for International Association for Biological Oceanography | September 2023 Seagrass nitrogen enrichment experiment, Laamu Maldives, January 2022. SANH project. Collaboration with University of Edinburgh and Maldives Resilient Reefs.
R package for QC of enrichment based NGS assays. ChIP-seq, cut&run, ATAC-seq, etc.
A shiny app to perform pathway, drug, brain cell type and brain region (based on the Allen Brain Atlas data) enrichment and visualize the results.
Ready-to-use curated genesets for cinaR
The goal of LRcell is to identify specific sub-cell types that drives the changes observed in a bulk RNA-seq differential gene expression experiment. To achieve this, LRcell utilizes sets of cell marker genes acquired from single-cell RNA-sequencing (scRNA-seq) as indicators for various cell types in the tissue of interest. Next, for each cell t…
mulea - an R package for enrichment analysis using various ontologies and empirical FDR correction
rbioapi: User-Friendly R Interface to Biologic Web Services' API
A Bioconductor package and shiny app for DNA methylation data length bias adjustment in gene set testing
Read HOMER motif analysis output in R.
Function Enrichment analysis and Network construction
Enrichment Networks for Pathway Enrichment Analysis
Lightweight Iterative Gene set Enrichment in R
🐛 How to use CENTIPEDE to determine if a transcription factor is bound.
Chemical Similarity Enrichment analysis of metabolomics datasets
pathfindR: Enrichment Analysis Utilizing Active Subnetworks
Add a description, image, and links to the enrichment topic page so that developers can more easily learn about it.
To associate your repository with the enrichment topic, visit your repo's landing page and select "manage topics."